View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_high_3 (Length: 514)
Name: NF2524_high_3
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_high_3 |
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| [»] scaffold0251 (1 HSPs) |
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Alignment Details
Target: scaffold0251 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 92 - 497
Target Start/End: Complemental strand, 6929 - 6534
Alignment:
| Q |
92 |
atgagggtgttgtcaaacaggtggataacgagtatttcacgagcgtttggaacgatatttgggtggaagacacnnnnnnnnnnnnaggtcaaaggtttat |
191 |
Q |
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| T |
6929 |
atgagtgtgttgtcaaaccggtgggtaacgtgtatttcacgagcgcttggaacgatatttgggtggtagatactatcta------aggtcaaaggtttat |
6836 |
T |
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| Q |
192 |
gggcttttgttggtctatgaacaaaaatactatggttgcgcaatgttgacattgtgagtcgaacaagtctgtgtgacagtttgttaggacgaagaagttg |
291 |
Q |
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| T |
6835 |
aggcttttgttggtctatgaacaaaaagactttggttgcgcaatgttgacattgtgagtcgaacaagtctgtgtgactgtttgttaggacgaagaagttg |
6736 |
T |
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| Q |
292 |
tttgtgtgggagtaccagctattggaggagctaaagtcagttttatgcagggttaccatcaattctatttggcggttaaaagttggagttgctgggattg |
391 |
Q |
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|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6735 |
ttcgtgtgggagtaccagttattggaggagctaaagtcagttttatgcagggttaccatcaattctatttggcggttaaaagttggagttgctgggattg |
6636 |
T |
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| Q |
392 |
ttctaagtaggtgttgctctgttagtttagccaataattttgattcagtacatatatatgtttggactacaggaatccaagttgaggagactaatattct |
491 |
Q |
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|||||| | ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6635 |
ttctaaattggttttgctctgttagtttagccaataattttgtttcagtac----atatgtttggactacaggaatccaagttgaggagactaatattct |
6540 |
T |
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