View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2524_high_30 (Length: 252)

Name: NF2524_high_30
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2524_high_30
NF2524_high_30
[»] chr1 (2 HSPs)
chr1 (155-236)||(35818077-35818158)
chr1 (13-109)||(35817984-35818078)
[»] chr7 (1 HSPs)
chr7 (137-221)||(47703367-47703451)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 35818077 - 35818158
Alignment:
Q  155 tttcgccaaaccagctttgacaaattctccattactaaatgagcagcactcccatctttaaagaagattgtaataaaaaatg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35818077 tttcgccaaaccagctttgacaaattctccattactaaatgagcagcactcccatctttaaagaagattgtaataaaaaatg 35818158  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 35817984 - 35818078
Alignment:
Q  13 gaacctgtgtaccacatatatattttttgttttcgagaaaggataggtgggttaatatgtacctattaaaagacctacatgcaataccagcagtgtt 109  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  35817984 gaacctgtgtaccacattttt--tttttgttttcgagaaaggataggtgggttagtatgtacctattaaaagacctacatgcaatatcagcagtgtt 35818078  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 47703451 - 47703367
Alignment:
Q  137 ataacaccaatgctctaatttcgccaaaccagctttgacaaattctccattactaaatgagcagcactcccatctttaaagaaga 221  Q
    ||||||||||||||| ||||  |||| ||||||||| ||| |||||||||||||||||||||||||||||| |||| | ||||||    
T  47703451 ataacaccaatgctccaattcagccagaccagctttcacatattctccattactaaatgagcagcactcccgtcttaagagaaga 47703367  T

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