View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2524_high_33 (Length: 243)

Name: NF2524_high_33
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2524_high_33
NF2524_high_33
[»] chr2 (18 HSPs)
chr2 (105-229)||(38581529-38581653)
chr2 (19-105)||(38581681-38581767)
chr2 (118-184)||(30737042-30737108)
chr2 (127-193)||(34107344-34107410)
chr2 (127-183)||(17896888-17896944)
chr2 (131-180)||(33124337-33124386)
chr2 (110-183)||(44487736-44487809)
chr2 (131-183)||(25463235-25463287)
chr2 (127-183)||(35352373-35352429)
chr2 (131-185)||(26975266-26975320)
chr2 (127-192)||(39334841-39334906)
chr2 (155-183)||(5613056-5613084)
chr2 (128-184)||(6282306-6282362)
chr2 (154-182)||(10915522-10915550)
chr2 (131-183)||(23664043-23664095)
chr2 (110-181)||(34018043-34018112)
chr2 (127-163)||(34644474-34644510)
chr2 (155-183)||(36182744-36182772)
[»] chr4 (22 HSPs)
chr4 (126-192)||(30203322-30203389)
chr4 (126-183)||(21664147-21664204)
chr4 (126-183)||(21672911-21672968)
chr4 (127-183)||(49039414-49039470)
chr4 (127-182)||(20610809-20610864)
chr4 (127-183)||(33359887-33359943)
chr4 (128-192)||(54854139-54854203)
chr4 (127-170)||(18740898-18740941)
chr4 (128-167)||(27921967-27922006)
chr4 (128-163)||(39449470-39449505)
chr4 (129-182)||(8998347-8998400)
chr4 (127-181)||(41492470-41492524)
chr4 (127-183)||(21476052-21476106)
chr4 (128-181)||(23226676-23226729)
chr4 (131-176)||(33524220-33524265)
chr4 (127-183)||(36257764-36257818)
chr4 (110-171)||(47416521-47416582)
chr4 (155-183)||(8965196-8965224)
chr4 (127-167)||(21023337-21023377)
chr4 (155-183)||(30057324-30057352)
chr4 (155-183)||(36132331-36132359)
chr4 (128-183)||(49280640-49280693)
[»] chr7 (20 HSPs)
chr7 (106-176)||(41000809-41000879)
chr7 (155-191)||(3766913-3766949)
chr7 (127-183)||(10958103-10958159)
chr7 (127-183)||(44409270-44409326)
chr7 (127-192)||(1649222-1649287)
chr7 (110-175)||(32309125-32309190)
chr7 (110-191)||(32814880-32814961)
chr7 (142-191)||(48053235-48053284)
chr7 (127-183)||(5773201-5773257)
chr7 (127-192)||(29658234-29658297)
chr7 (110-192)||(36315934-36316016)
chr7 (128-181)||(3481140-3481193)
chr7 (127-183)||(11808108-11808165)
chr7 (110-183)||(25711101-25711173)
chr7 (127-192)||(26734232-26734296)
chr7 (126-183)||(28555820-28555877)
chr7 (126-183)||(42976569-42976626)
chr7 (124-176)||(7162644-7162696)
chr7 (127-183)||(10020438-10020494)
chr7 (153-185)||(17900848-17900880)
[»] chr8 (18 HSPs)
chr8 (110-183)||(220331-220404)
chr8 (110-183)||(689486-689559)
chr8 (110-183)||(733954-734027)
chr8 (110-183)||(857850-857923)
chr8 (110-170)||(14011020-14011080)
chr8 (127-187)||(16808325-16808385)
chr8 (155-192)||(43085154-43085191)
chr8 (126-189)||(29653123-29653187)
chr8 (128-183)||(39208838-39208893)
chr8 (126-188)||(22438548-22438610)
chr8 (155-192)||(11875988-11876025)
chr8 (155-192)||(11890995-11891032)
chr8 (123-160)||(26773694-26773731)
chr8 (126-166)||(4604339-4604379)
chr8 (127-183)||(18123931-18123987)
chr8 (155-191)||(29514728-29514764)
chr8 (155-183)||(34413164-34413192)
chr8 (155-183)||(35818161-35818189)
[»] chr5 (14 HSPs)
chr5 (127-192)||(3535896-3535961)
chr5 (126-171)||(17137848-17137893)
chr5 (128-181)||(18535985-18536038)
chr5 (110-183)||(34325318-34325391)
chr5 (127-183)||(8934851-8934907)
chr5 (127-175)||(37986844-37986892)
chr5 (127-182)||(36116850-36116904)
chr5 (127-166)||(39684308-39684347)
chr5 (127-176)||(20186934-20186983)
chr5 (126-183)||(27006409-27006466)
chr5 (127-187)||(13862194-13862254)
chr5 (155-187)||(22569181-22569213)
chr5 (127-171)||(22687862-22687906)
chr5 (127-183)||(28537205-28537261)
[»] scaffold0002 (1 HSPs)
scaffold0002 (127-183)||(440469-440525)
[»] chr1 (26 HSPs)
chr1 (127-183)||(38028607-38028663)
chr1 (127-188)||(195114-195175)
chr1 (127-188)||(2643779-2643840)
chr1 (154-195)||(3269712-3269753)
chr1 (127-192)||(9768769-9768834)
chr1 (127-192)||(9931157-9931222)
chr1 (127-183)||(3341705-3341761)
chr1 (127-183)||(9769549-9769605)
chr1 (127-183)||(12553264-12553320)
chr1 (127-183)||(19866545-19866601)
chr1 (131-183)||(23758221-23758273)
chr1 (155-191)||(33033228-33033264)
chr1 (127-183)||(48260158-48260214)
chr1 (131-183)||(50147598-50147650)
chr1 (128-183)||(1721211-1721266)
chr1 (127-182)||(2902997-2903052)
chr1 (123-162)||(3261924-3261963)
chr1 (126-183)||(4069581-4069636)
chr1 (127-165)||(4511512-4511550)
chr1 (130-183)||(7906294-7906348)
chr1 (128-190)||(9163354-9163415)
chr1 (127-184)||(13941389-13941446)
chr1 (127-176)||(23973458-23973507)
chr1 (127-171)||(23750220-23750264)
chr1 (127-171)||(41677130-41677174)
chr1 (155-195)||(48497170-48497210)
[»] chr3 (19 HSPs)
chr3 (127-188)||(28951936-28951997)
chr3 (127-182)||(33533273-33533328)
chr3 (126-183)||(43911675-43911732)
chr3 (155-192)||(44764501-44764538)
chr3 (131-183)||(4009987-4010039)
chr3 (128-192)||(6054185-6054249)
chr3 (127-175)||(40160805-40160853)
chr3 (155-187)||(46798680-46798712)
chr3 (110-193)||(50724420-50724501)
chr3 (153-183)||(3993676-3993706)
chr3 (110-183)||(50788357-50788428)
chr3 (126-175)||(8724841-8724889)
chr3 (126-175)||(9076728-9076776)
chr3 (127-191)||(28206500-28206562)
chr3 (155-183)||(16141322-16141350)
chr3 (155-183)||(32429849-32429877)
chr3 (127-187)||(36842232-36842292)
chr3 (131-183)||(40956656-40956708)
chr3 (127-175)||(47497148-47497196)
[»] chr6 (20 HSPs)
chr6 (154-191)||(15963875-15963912)
chr6 (128-176)||(4844214-4844262)
chr6 (127-183)||(17305587-17305642)
chr6 (128-183)||(3243887-3243942)
chr6 (127-181)||(3037560-3037614)
chr6 (154-188)||(25045841-25045875)
chr6 (154-195)||(978064-978105)
chr6 (155-192)||(13732913-13732950)
chr6 (131-183)||(16119352-16119405)
chr6 (127-192)||(26669619-26669684)
chr6 (155-183)||(9888465-9888493)
chr6 (131-183)||(12291244-12291296)
chr6 (131-183)||(14948988-14949040)
chr6 (155-183)||(16913841-16913869)
chr6 (127-183)||(17347324-17347380)
chr6 (127-183)||(20149948-20150004)
chr6 (127-183)||(22182828-22182884)
chr6 (155-183)||(28222964-28222992)
chr6 (127-163)||(29204858-29204894)
chr6 (127-183)||(30668153-30668209)
[»] scaffold0366 (1 HSPs)
scaffold0366 (155-191)||(792-828)
[»] scaffold0118 (1 HSPs)
scaffold0118 (127-178)||(37302-37353)
[»] scaffold0119 (1 HSPs)
scaffold0119 (127-192)||(1109-1174)
[»] scaffold0038 (1 HSPs)
scaffold0038 (155-183)||(23462-23490)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 38581653 - 38581529
Alignment:
Q  105 tgagattcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaataagaagatgag 204  Q
    ||||||||||| ||||| ||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38581653 tgagattcgaacctcggacatcccacttattcatcttaaaaaaggtgtattctaaccactaggctacttgaccaaaaaataaataaaataagaagatgat 38581554  T
Q  205 tttcttatgtctatgttagtataat 229  Q
    |||||||||||||||||||||||||    
T  38581553 tttcttatgtctatgttagtataat 38581529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 38581767 - 38581681
Alignment:
Q  19 ataatgtcggtccaagaagaggtgacaatgtcacttaattagctaataataggaagatggtttcctcgtgagcataactcagttggt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38581767 ataatgtcggtccaagaagaggtgacaatgtcacttaattagctaataataggaagatggtttcctcgtgagcataactcagttggt 38581681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 30737042 - 30737108
Alignment:
Q  118 tcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaat 184  Q
    |||| ||| ||||||||||||||||||||||||| ||||||  |||||||||||||||  |||||||    
T  30737042 tcggacatcccacttattcaccttaaaaaatgtgaattctagtcactaggctacttgaaaaaaaaat 30737108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 34107344 - 34107410
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaat 193  Q
    ||||||||||||||| ||||||||| |||||| ||||||| ||||||||| |||||| ||| |||||    
T  34107344 ccacttattcaccttgaaaaatgtgaattctagccactagactacttgacaaaaaaaaaaaaaaaat 34107410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 17896888 - 17896944
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||||||||||||| |||||||||||||  |||||| || ||||||    
T  17896888 ccacttattcaccttaaaaaatgtgaattctaaccactaaactacttaacaaaaaaa 17896944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 33124386 - 33124337
Alignment:
Q  131 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaa 180  Q
    ||||||||||||||||| ||| |||||||||||||  |||||||||||||    
T  33124386 ttattcaccttaaaaaaggtgaattctaaccactatactacttgaccaaa 33124337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 44487809 - 44487736
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||| | ||| ||| ||||||||||||||||||||| ||| |||||||||||||  |||| |||| ||||||    
T  44487809 ttcgaaccccggacatcccacttattcaccttaaaaaaggtgaattctaaccactaacctacctgacaaaaaaa 44487736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 25463287 - 25463235
Alignment:
Q  131 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||| |||||  || |||||||||||||||||||||||| ||||||    
T  25463287 ttattcaccttgaaaaaaatgaattctaaccactaggctacttgacaaaaaaa 25463235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 35352429 - 35352373
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||||||| ||||||  |||||| ||||||||| ||||||    
T  35352429 ccacttattcaccttgaaaaatgtgaattctagtcactagactacttgacaaaaaaa 35352373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 26975320 - 26975266
Alignment:
Q  131 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaata 185  Q
    |||||||| |||||||| ||  ||||||||||||| |||||||||| ||||||||    
T  26975320 ttattcactttaaaaaaggttaattctaaccactacgctacttgacaaaaaaata 26975266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 39334906 - 39334841
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    |||||||||||| || ||||| ||| |||||| ||||||| ||||||||| |||||| ||| ||||    
T  39334906 ccacttattcactttgaaaaaggtgaattctagccactagactacttgacaaaaaaaaaaaaaaaa 39334841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 5613056 - 5613084
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  5613056 tctaaccactaggctacttgaccaaaaaa 5613084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 6282306 - 6282362
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaat 184  Q
    ||||||||||| || ||||||||| |||||||||||||   |||||||| |||||||    
T  6282306 cacttattcactttgaaaaatgtgaattctaaccactaaattacttgacaaaaaaat 6282362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 10915550 - 10915522
Alignment:
Q  154 ttctaaccactaggctacttgaccaaaaa 182  Q
    |||||||||||||||||||||||||||||    
T  10915550 ttctaaccactaggctacttgaccaaaaa 10915522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 23664043 - 23664095
Alignment:
Q  131 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||| ||||| ||| ||||||| |||||| ||||||||| ||||||    
T  23664043 ttattcaccttgaaaaaagtgaattctaatcactagactacttgacaaaaaaa 23664095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 34018112 - 34018043
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 181  Q
    |||||| ||||| ||  |||||||||||||||| ||   ||| ||||||||||||||||||| |||||||||    
T  34018112 ttcgaacctcggacaccccacttattcaccttataag--gtgaattctaaccactaggctacctgaccaaaa 34018043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 34644510 - 34644474
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccac 163  Q
    |||||||||||||||||||| |||| |||||||||||    
T  34644510 ccacttattcaccttaaaaattgtgaattctaaccac 34644474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 36182744 - 36182772
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  36182744 tctaaccactaggctacttgaccaaaaaa 36182772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 30203322 - 30203389
Alignment:
Q  126 tccacttattcacctt-aaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||    
T  30203322 tccacttattcatcttgaaaaaatgtgtattctaaccactaggctacttgacaaaaataaaaataaaa 30203389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 21664147 - 21664204
Alignment:
Q  126 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||| ||| | ||| ||| |||||||||||||||||||||||||||||||    
T  21664147 tccacttattcatcttgagaaaggtgaattctaaccactaggctacttgaccaaaaaa 21664204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 21672911 - 21672968
Alignment:
Q  126 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||| ||| | ||| ||| |||||||||||||||||||||||||||||||    
T  21672911 tccacttattcatcttgagaaaggtgaattctaaccactaggctacttgaccaaaaaa 21672968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 49039470 - 49039414
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||||||| |||||||||    
T  49039470 ccacttattcaccttgaaaaaggtgaattctagccactaggctacttaaccaaaaaa 49039414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 20610809 - 20610864
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaa 182  Q
    ||||||||||||||||||||| ||| |||||| ||||||| |||| ||||||||||    
T  20610809 ccacttattcaccttaaaaaaggtgaattctagccactagactacctgaccaaaaa 20610864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 33359887 - 33359943
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||||||| || ||||||    
T  33359887 ccacttattcaccttgaaaaaggtgaattctagccactaggctacttaacaaaaaaa 33359943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 54854203 - 54854139
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    |||||||||||||| ||||| ||| |||||| ||||||| ||||||||| |||||| ||| ||||    
T  54854203 cacttattcaccttgaaaaaagtgaattctagccactagactacttgacaaaaaaaaaaaaaaaa 54854139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 18740941 - 18740898
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggcta 170  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||    
T  18740941 ccacttattcaccttgaaaaatgttcattctaaccactaggcta 18740898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 27921967 - 27922006
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactagg 167  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  27921967 cacttattcatcttaaaaaatgtgaattctaaccactagg 27922006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 39449470 - 39449505
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccac 163  Q
    |||||||||||||||||||||||| |||||||||||    
T  39449470 cacttattcaccttaaaaaatgtgaattctaaccac 39449505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 8998400 - 8998347
Alignment:
Q  129 acttattcaccttaa-aaaatgtgtattctaaccactaggctacttgaccaaaaa 182  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||    
T  8998400 acttattcaccttaaaaaaatgtgaattctaa-cactaggctacttcaccaaaaa 8998347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 41492524 - 41492470
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 181  Q
    ||||||||| ||||| ||||| ||| |||||| |||||||| |||||||||||||    
T  41492524 ccacttatttaccttgaaaaaggtgaattctagccactaggttacttgaccaaaa 41492470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 21476106 - 21476052
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||| |||| |||  ||| |||||| ||||||||||||||||||||||||    
T  21476106 ccacttattcatcttataaa--gtgaattctagccactaggctacttgaccaaaaaa 21476052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 23226729 - 23226676
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 181  Q
    |||||||||||||||||||||||| ||| || ||||||  ||||||||| ||||    
T  23226729 cacttattcaccttaaaaaatgtgaattatagccactatactacttgacaaaaa 23226676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 33524265 - 33524220
Alignment:
Q  131 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 176  Q
    ||||||||| ||||||||||| ||| |||||||||| |||||||||    
T  33524265 ttattcaccataaaaaatgtgaattttaaccactagactacttgac 33524220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 36257764 - 36257818
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||| |||||||  ||| |||||| ||||||||||||| ||||||||||    
T  36257764 ccacttattcactttaaaaa--gtgaattctagccactaggctactagaccaaaaaa 36257818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 47416521 - 47416582
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctac 171  Q
    |||||||||||| ||  |||||||||||| || ||||| ||| ||||||||||||| |||||    
T  47416521 ttcgaatctcggacaccccacttattcactttgaaaaaggtgaattctaaccactaagctac 47416582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 8965196 - 8965224
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  8965196 tctaaccactaggctacttgaccaaaaaa 8965224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 21023377 - 21023337
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactagg 167  Q
    ||||||||||||||| ||||| ||| |||||||||||||||    
T  21023377 ccacttattcaccttgaaaaaggtgaattctaaccactagg 21023337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 30057324 - 30057352
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  30057324 tctaaccactaggctacttgaccaaaaaa 30057352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 36132331 - 36132359
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  36132331 tctaaccactaggctacttgaccaaaaaa 36132359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 49280693 - 49280640
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||   ||| |||||||||||||||||||||||| ||||||    
T  49280693 cacttattcaccttataag--gtgaattctaaccactaggctacttgacaaaaaaa 49280640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 41000809 - 41000879
Alignment:
Q  106 gagattcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 176  Q
    |||||||||||| ||  ||| ||||||||||||||||||||||||| ||||||||||| || |||||||||    
T  41000809 gagattcgaatcccgaacatcccacttattcaccttaaaaaatgtgaattctaaccaccagactacttgac 41000879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 3766913 - 3766949
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaataaataaa 191  Q
    |||||||||||||||||||||||||||||||||||||    
T  3766913 tctaaccactaggctacttgaccaaaaaataaataaa 3766949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 10958103 - 10958159
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||| |||||| ||| |||||| ||||||||||||| ||||||||||    
T  10958103 ccacttattcacctcaaaaaaggtgaattctagccactaggctactagaccaaaaaa 10958159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 44409270 - 44409326
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||| ||| ||||||||||||||| |||||||| ||||||    
T  44409270 ccacttattcaccttgaaaaaggtgaattctaaccactaggttacttgacaaaaaaa 44409326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 1649222 - 1649287
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    ||||||||||||||| ||||  ||| |||||| ||||||||||| |||||||||||| ||| ||||    
T  1649222 ccacttattcaccttgaaaatggtgaattctagccactaggctatttgaccaaaaaaaaaaaaaaa 1649287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 32309190 - 32309125
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 175  Q
    |||||||||| | ||  ||| ||||||||||||||||||||| |||||| ||||||| ||||||||    
T  32309190 ttcgaatctcagacaccccagttattcaccttaaaaaatgtgaattctagccactagactacttga 32309125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 32814880 - 32814961
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaa 191  Q
    |||||||| ||| ||  |||||||||||  | |||||| ||| ||| |||||||| | ||||||||||||||||||||||||    
T  32814880 ttcgaatcccggacaccccacttattcatataaaaaaaggtgaattttaaccactggactacttgaccaaaaaataaataaa 32814961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 48053235 - 48053284
Alignment:
Q  142 aaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaa 191  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||||    
T  48053235 aaaaaatgtgaattctaaccactaagcaacttgacaaaaaaataaataaa 48053284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 5773201 - 5773257
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||| ||||||| ||||||    
T  5773201 ccacttattcaccttgaaaaaggtggattctacccactaggcgacttgacaaaaaaa 5773257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 29658297 - 29658234
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    |||||||||||||||| ||   ||| |||||| |||||||||||||||||||||||| ||| ||||    
T  29658297 ccacttattcaccttataag--gtgaattctagccactaggctacttgaccaaaaaaaaaaaaaaa 29658234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 36316016 - 36315934
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    |||||| ||||| ||  |||||||||||||||| | || ||| |||||||| |||| ||||||||||| ||||| ||| ||||    
T  36316016 ttcgaacctcggacaccccacttattcaccttatataaagtgaattctaacaactaagctacttgacctaaaaaaaaaaaaaa 36315934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 3481193 - 3481140
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 181  Q
    |||||||||||||||||||  ||| |||||||||||||  |||||||| |||||    
T  3481193 cacttattcaccttaaaaatggtgaattctaaccactaaactacttgatcaaaa 3481140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 11808108 - 11808165
Alignment:
Q  127 ccacttattcacctta-aaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||| ||||| ||| |||||||| ||||| ||||||||| ||||||    
T  11808108 ccacttattcaccttagaaaaacgtgaattctaacaactagactacttgacaaaaaaa 11808165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 25711173 - 25711101
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||| ||||| ||  |||||||||||| ||| ||| |||| |||||| ||||||||||| ||||||||||||    
T  25711173 ttcgaacctcggacaccccacttattcactttataaa-tgtgaattctatccactaggctatttgaccaaaaaa 25711101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 26734296 - 26734232
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||||  ||| ||||||| ||||||||    
T  26734296 ccacttattcaccttgaaaaaggtgaattctagccactaggctatctga-caaaaaaaaaataaaa 26734232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 28555877 - 28555820
Alignment:
Q  126 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||| ||  |||||||| | ||||||| ||||| ||||||    
T  28555877 tccacttattcaccttaaaaaaggtaaattctaactattaggctatttgacaaaaaaa 28555820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 42976626 - 42976569
Alignment:
Q  126 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||| |||||||| ||| |||||| | ||||| ||||||||| ||||||    
T  42976626 tccacttattcactttaaaaaaggtgaattctacctactagactacttgacaaaaaaa 42976569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 7162696 - 7162644
Alignment:
Q  124 attccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 176  Q
    |||||||||||||| ||| ||||| ||| |||||||| ||||||||| |||||    
T  7162696 attccacttattcatcttgaaaaaggtgaattctaactactaggctatttgac 7162644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 10020494 - 10020438
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||| ||| ||||| ||| |||||| ||||||| ||||||||| ||||||    
T  10020494 ccacttattcatcttgaaaaaggtgaattctacccactagcctacttgacaaaaaaa 10020438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 17900880 - 17900848
Alignment:
Q  153 attctaaccactaggctacttgaccaaaaaata 185  Q
    |||||| ||||||||||||||||||||||||||    
T  17900880 attctagccactaggctacttgaccaaaaaata 17900848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 220404 - 220331
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  220404 ttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaaccactagactacttgaccaaaaaa 220331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 689559 - 689486
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  689559 ttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaaccactagactacttgaccaaaaaa 689486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 734027 - 733954
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  734027 ttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaaccactagactacttgaccaaaaaa 733954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 857923 - 857850
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  857923 ttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaaccactagactacttgaccaaaaaa 857850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 14011080 - 14011020
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggcta 170  Q
    |||||| ||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||    
T  14011080 ttcgaacctcggacatcccacttattcatcttaaaaaatgtgaattctaaccactaggcta 14011020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 16808385 - 16808325
Alignment:
Q  127 ccacttattcaccttaaaaaat-gtgtattctaaccactaggctacttgaccaaaaaataaa 187  Q
    |||||||||||||||||||||  ||| ||||||||||||||||| ||||| |||||||||||    
T  16808385 ccacttattcaccttaaaaaaaagtgaattctaaccactaggctgcttga-caaaaaataaa 16808325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 43085191 - 43085154
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  43085191 tctaaccactaggctacttgaccaaaaaataaaaaaaa 43085154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 29653123 - 29653187
Alignment:
Q  126 tccacttattcaccttaaaaaatg-tgtattctaaccactaggctacttgaccaaaaaataaata 189  Q
    |||||||||||||||||||||| | || |||||| ||||||  || |||||||||||||||||||    
T  29653123 tccacttattcaccttaaaaaaaggtgaattctagccactaaactgcttgaccaaaaaataaata 29653187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 39208893 - 39208838
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||| ||||| ||| |||||| ||||||| ||||||||| ||||||    
T  39208893 cacttattcacctttaaaaaggtgaattctagccactagactacttgacaaaaaaa 39208838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 22438610 - 22438548
Alignment:
Q  126 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaat 188  Q
    |||||||||||||||||||||| ||| ||||||| ||||||  ||||| ||| ||||| ||||    
T  22438610 tccacttattcaccttaaaaaaggtgaattctaatcactagattactttacccaaaaaaaaat 22438548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 11875988 - 11876025
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  11875988 tctaaccactaggctacttgaccaaaaaaaaaaaaaaa 11876025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 11890995 - 11891032
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  11890995 tctaaccactaggctacttgaccaaaaaaaaaaaaaaa 11891032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 26773731 - 26773694
Alignment:
Q  123 cattccacttattcaccttaaaaaatgtgtattctaac 160  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  26773731 cattccacttattcatcttaaaaaatgtgaattctaac 26773694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 4604379 - 4604339
Alignment:
Q  126 tccacttattcaccttaaaaaatgtgtattctaaccactag 166  Q
    ||||||||||||||||||||||  || ||||||||||||||    
T  4604379 tccacttattcaccttaaaaaagatgaattctaaccactag 4604339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 18123931 - 18123987
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||| |||||||||| ||| |||||| || ||||  |||||||||||||||    
T  18123931 ccacttattctccttaaaaaaggtgaattctagccgctagattacttgaccaaaaaa 18123987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 29514728 - 29514764
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaataaataaa 191  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  29514728 tctagccactaggctacttgacaaaaaaataaataaa 29514764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 34413164 - 34413192
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  34413164 tctaaccactaggctacttgaccaaaaaa 34413192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 35818161 - 35818189
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  35818161 tctaaccactaggctacttgaccaaaaaa 35818189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 3535961 - 3535896
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||| ||| ||||    
T  3535961 ccacttattcaccttaaaaaaagtgaattctaaccactaggctacctgacaaaaaaaaaaaaaaaa 3535896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 17137893 - 17137848
Alignment:
Q  126 tccacttattcaccttaaaaaatgtgtattctaaccactaggctac 171  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||    
T  17137893 tccacttattcaccttgaaaaacgtgaattctaaccactaggctac 17137848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 18535985 - 18536038
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 181  Q
    |||||||||||||| ||||| ||| |||||||||||||  ||||||||||||||    
T  18535985 cacttattcaccttgaaaaaagtgaattctaaccactaaactacttgaccaaaa 18536038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 34325318 - 34325391
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||  ||| | |||||||||||||||||||  || |||||| |||||| |||||||||| ||||||    
T  34325318 ttcgaatctcgaacatccaacttattcaccttaaaaaaaatgaattctagccactaagctacttgacaaaaaaa 34325391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 8934851 - 8934907
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||| ||  |||||||||| ||| ||||||||||||||||    
T  8934851 ccacttattcacctttaaaaaggtaaattctaaccattagactacttgaccaaaaaa 8934907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 37986892 - 37986844
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 175  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||||||||||    
T  37986892 ccacttattcaccttgaaaaaggtgaattctagccactaggctacttga 37986844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 36116904 - 36116850
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaa 182  Q
    ||||||||||| ||| ||||||||| |||||| | |||||||||||||||||||||    
T  36116904 ccacttattcatcttcaaaaatgtgaattctagc-actaggctacttgaccaaaaa 36116850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 39684308 - 39684347
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactag 166  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  39684308 ccacttattcaccttaaaaaaggtgaattctaaccactag 39684347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 20186934 - 20186983
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 176  Q
    ||||||||||||||| ||||| ||| ||| |||||||||| |||||||||    
T  20186934 ccacttattcaccttgaaaaaagtgaattataaccactagactacttgac 20186983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 27006409 - 27006466
Alignment:
Q  126 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||| ||||| ||| |||||| ||  ||||||||||||| ||||||    
T  27006409 tccacttattcaccttgaaaaaggtgaattctagccgttaggctacttgacaaaaaaa 27006466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 13862194 - 13862254
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaa 187  Q
    ||||||||||  ||| ||||| | | ||||||||||||||||||| |||| ||||||||||    
T  13862194 ccacttattcttcttgaaaaaggagaattctaaccactaggctacctgacaaaaaaataaa 13862254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 22569213 - 22569181
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaataaa 187  Q
    |||| ||||||||||||||||||||||||||||    
T  22569213 tctagccactaggctacttgaccaaaaaataaa 22569181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 22687906 - 22687862
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctac 171  Q
    ||||||||||||||| ||||| ||| |||||||||||||| ||||    
T  22687906 ccacttattcaccttgaaaaaggtgaattctaaccactagactac 22687862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 28537205 - 28537261
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||| || ||||  ||| |||||| ||||||||||||||||| ||||||    
T  28537205 ccacttattcactttgaaaatggtgaattctagccactaggctacttgacaaaaaaa 28537261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 440469 - 440525
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| |||| ||||||    
T  440469 ccacttattcaccttaaaaaaggtgaattctaaccactaggctacctgacaaaaaaa 440525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 38028607 - 38028663
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||    
T  38028607 ccacttattcaccttgaaaaatgtgaattctaactactaggctacttgacaaaaaaa 38028663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 195114 - 195175
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaat 188  Q
    ||||||||||||||| ||||| ||| ||||||||||||| |||||||||| |||||| ||||    
T  195114 ccacttattcaccttgaaaaaggtgaattctaaccactaagctacttgacaaaaaaaaaaat 195175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 2643840 - 2643779
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaat 188  Q
    ||||||||||||||||||||||||| | |||||||||||| |||| |||| |||||| ||||    
T  2643840 ccacttattcaccttaaaaaatgtgaactctaaccactagactacctgacaaaaaaaaaaat 2643779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 3269712 - 3269753
Alignment:
Q  154 ttctaaccactaggctacttgaccaaaaaataaataaaataa 195  Q
    ||||| |||||||||||||||||||||||| |||||||||||    
T  3269712 ttctagccactaggctacttgaccaaaaaaaaaataaaataa 3269753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 9768834 - 9768769
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    ||||||||||||||| ||||| ||| |||||| | |||||||||| ||||||||||| ||| ||||    
T  9768834 ccacttattcaccttgaaaaaggtgaattctagctactaggctacctgaccaaaaaaaaaaaaaaa 9768769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 9931157 - 9931222
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    |||||||||||||||||| || ||| |||||||| ||||| ||||||||| |||||| ||| ||||    
T  9931157 ccacttattcaccttaaagaaggtgaattctaactactagactacttgacaaaaaaaaaaaaaaaa 9931222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 3341761 - 3341705
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||| | |||||||||||    
T  3341761 ccacttattcaccttgaaaaaggtgaattctagccactaggctgcctgaccaaaaaa 3341705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 9769605 - 9769549
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||| ||| ||||||||||||| ||||| |||| ||||||    
T  9769605 ccacttattcaccttgaaaaaggtgaattctaaccactaagctacctgacaaaaaaa 9769549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 12553264 - 12553320
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||| || ||||| ||| |||||| |||||||||||| |||||||||||    
T  12553264 ccacttattcactttgaaaaaggtgaattctagccactaggctacctgaccaaaaaa 12553320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 19866545 - 19866601
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||||||||| ||| |||||| ||||||  ||||||||| ||||||    
T  19866545 ccacttattcaccttaaaaaaggtgaattctagccactaaactacttgacaaaaaaa 19866601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 23758273 - 23758221
Alignment:
Q  131 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||| |||||||| |||| |||||||||||||| ||||||||| ||||||    
T  23758273 ttattcatcttaaaaattgtgaattctaaccactagactacttgacaaaaaaa 23758221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 33033228 - 33033264
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaataaataaa 191  Q
    |||||||||||| ||||||||||||||||||||||||    
T  33033228 tctaaccactagactacttgaccaaaaaataaataaa 33033264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 48260214 - 48260158
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||||||| |||||| ||| |||||| |||||| ||||||    
T  48260214 ccacttattcaccttgaaaaatgtgaattctagccattaggctccttgacaaaaaaa 48260158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 50147598 - 50147650
Alignment:
Q  131 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||||| ||| |||||||||||||  ||||||||| ||||||    
T  50147598 ttattcaccttaaaaaaagtgaattctaaccactaaactacttgacaaaaaaa 50147650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 1721211 - 1721266
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||| ||| |||||| ||  ||||||||||||| ||||||    
T  1721211 cacttattcaccttaaaaaaggtgaattctagccgttaggctacttgacaaaaaaa 1721266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 2903052 - 2902997
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaa 182  Q
    ||||||||||||||| ||||| | | |||||| |||||||| ||||||||||||||    
T  2903052 ccacttattcaccttgaaaaaggagaattctagccactaggttacttgaccaaaaa 2902997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 3261924 - 3261963
Alignment:
Q  123 cattccacttattcaccttaaaaaatgtgtattctaacca 162  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  3261924 cattccacttattcaccttgaaaaatgtgaattctaacca 3261963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 4069636 - 4069581
Alignment:
Q  126 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||| |   ||| |||||| ||||||||||||||||||||||||    
T  4069636 tccacttattcaccttaagag--gtgaattctacccactaggctacttgaccaaaaaa 4069581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 4511550 - 4511512
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccacta 165  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  4511550 ccacttattcaccttaaaaaaggtgaattctaaccacta 4511512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 7906348 - 7906294
Alignment:
Q  130 cttattcaccttaaaaaatgtgtattctaaccactaggctacttg-accaaaaaa 183  Q
    |||||| ||||||||||||||| |||||| |||||||| |||||| |||||||||    
T  7906348 cttattgaccttaaaaaatgtgaattctagccactagggtacttgaaccaaaaaa 7906294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 9163354 - 9163415
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataa 190  Q
    |||||||||| |||||||| |||| |||||| ||||||| |||| ||||||||||||| ||||    
T  9163354 cacttattcatcttaaaaa-tgtgaattctagccactagactacctgaccaaaaaatatataa 9163415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 13941389 - 13941446
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaat 184  Q
    ||||||||||| ||| ||||| ||| |||||||||||||  ||||||||| |||||||    
T  13941389 ccacttattcatcttgaaaaaagtgaattctaaccactaaactacttgacaaaaaaat 13941446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 23973507 - 23973458
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 176  Q
    |||||||||||| || ||||||||| |||||| ||||||| |||||||||    
T  23973507 ccacttattcacgttgaaaaatgtgaattctagccactagactacttgac 23973458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 23750220 - 23750264
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctac 171  Q
    ||||||||||| ||| ||||| ||| |||||||||||||||||||    
T  23750220 ccacttattcatcttgaaaaaggtgaattctaaccactaggctac 23750264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 41677130 - 41677174
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctac 171  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||||||    
T  41677130 ccacttattcaccttgaaaaaggtgaattctagccactaggctac 41677174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 48497210 - 48497170
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaataaataaaataa 195  Q
    |||| |||||||||||||||||||||||  |||||||||||    
T  48497210 tctagccactaggctacttgaccaaaaataaaataaaataa 48497170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 28951936 - 28951997
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaat 188  Q
    ||||||||||||||| ||||||||| |||||||||| || | ||||||||||||||| ||||    
T  28951936 ccacttattcaccttgaaaaatgtgaattctaaccattaagttacttgaccaaaaaaaaaat 28951997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 33533273 - 33533328
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaa 182  Q
    ||||||||||||||||||||| ||| |||||||| ||||| ||||||||| |||||    
T  33533273 ccacttattcaccttaaaaaaagtgaattctaacaactagactacttgacaaaaaa 33533328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 43911675 - 43911732
Alignment:
Q  126 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||| ||||||||| ||| |  ||||||||||||||||| ||||||    
T  43911675 tccacttattcaccttgaaaaatgtgaattattgccactaggctacttgacaaaaaaa 43911732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 44764538 - 44764501
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    |||| |||||||||||||||||||||||||||||||||    
T  44764538 tctagccactaggctacttgaccaaaaaataaataaaa 44764501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 4010039 - 4009987
Alignment:
Q  131 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||| ||||   || |||||||||||||||||||||||||||||||    
T  4010039 ttattcaccttgaaaatgttgaattctaaccactaggctacttgaccaaaaaa 4009987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 6054249 - 6054185
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    |||||||||||||| ||||| ||| |||||||||||||| ||| ||||| |||||| ||| ||||    
T  6054249 cacttattcaccttgaaaaaggtgaattctaaccactagactatttgacaaaaaaaaaaaaaaaa 6054185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 40160805 - 40160853
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 175  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||||||||||    
T  40160805 ccacttattcacctttaaaaaggtgaattctagccactaggctacttga 40160853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 46798680 - 46798712
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaataaa 187  Q
    |||||||||||||||||||||||||||||||||    
T  46798680 tctaaccactaggctacttgaccaaaaaataaa 46798712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 50724420 - 50724501
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaat 193  Q
    |||||| ||||| ||  ||||||||||||||||||||  ||| |||||| |||||||||||| |||| |||||| || ||||||    
T  50724420 ttcgaacctcggacaccccacttattcaccttaaaaa--gtgaattctagccactaggctacctgacaaaaaaaaaagtaaaat 50724501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 183
Target Start/End: Complemental strand, 3993706 - 3993676
Alignment:
Q  153 attctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||||    
T  3993706 attctaaccactaggctacttgaccaaaaaa 3993676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 50788428 - 50788357
Alignment:
Q  110 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||| ||||| ||  ||||||||||||||||||||  ||| |||||| |||||||||||| |||| ||||||    
T  50788428 ttcgaacctcggacaccccacttattcaccttaaaaa--gtgaattctagccactaggctacctgacaaaaaaa 50788357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 8724841 - 8724889
Alignment:
Q  126 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 175  Q
    ||||||||||||||||||||||||  | ||||||||||||| ||||||||    
T  8724841 tccacttattcaccttaaaaaatgaat-ttctaaccactagactacttga 8724889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 9076728 - 9076776
Alignment:
Q  126 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 175  Q
    ||||||||||||||||||||||||  | ||||||||||||| ||||||||    
T  9076728 tccacttattcaccttaaaaaatgaat-ttctaaccactagactacttga 9076776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 28206562 - 28206500
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaa 191  Q
    |||||||||||||||| ||   ||| ||||||||||||||||||| ||| ||| |||||||||||    
T  28206562 ccacttattcaccttataag--gtgaattctaaccactaggctacctgatcaataaataaataaa 28206500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 16141350 - 16141322
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  16141350 tctaaccactaggctacttgaccaaaaaa 16141322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 32429849 - 32429877
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  32429849 tctaaccactaggctacttgaccaaaaaa 32429877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 36842232 - 36842292
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaa 187  Q
    |||||||||||| || ||||| ||| |||||||||||||  ||| ||||| ||||||||||    
T  36842232 ccacttattcactttgaaaaaagtgaattctaaccactaatctatttgacaaaaaaataaa 36842292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 40956708 - 40956656
Alignment:
Q  131 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||| ||||||||| ||| |||||||||||||  ||||||||| ||||||    
T  40956708 ttattcagcttaaaaaaggtgaattctaaccactaaactacttgacaaaaaaa 40956656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 47497148 - 47497196
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 175  Q
    ||||||||||||||||||||| ||| ||| |||||||||  ||||||||    
T  47497148 ccacttattcaccttaaaaaaggtgaattttaaccactaaactacttga 47497196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 15963912 - 15963875
Alignment:
Q  154 ttctaaccactaggctacttgaccaaaaaataaataaa 191  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  15963912 ttctagccactaggctacttgaccaaaaaataaataaa 15963875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 4844214 - 4844262
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 176  Q
    |||||||||||||| ||||| ||| |||||||||||||| |||||||||    
T  4844214 cacttattcaccttgaaaaaagtgaattctaaccactagactacttgac 4844262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 17305587 - 17305642
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||| ||| ||||||| ||||| |||||||||||||||||    
T  17305587 ccacttattcaccttgaaaaa-gtgaattctaatcactaagctacttgaccaaaaaa 17305642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 3243887 - 3243942
Alignment:
Q  128 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||| ||| |||||||||||||  |||| |||| ||||||    
T  3243887 cacttattcaccttaaaaaaggtgaattctaaccactaaactacctgacaaaaaaa 3243942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 3037614 - 3037560
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 181  Q
    ||||||||||| ||||||||| ||| ||||||||||||| |||||| ||| ||||    
T  3037614 ccacttattcatcttaaaaaaggtgaattctaaccactaagctactcgactaaaa 3037560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 25045841 - 25045875
Alignment:
Q  154 ttctaaccactaggctacttgaccaaaaaataaat 188  Q
    |||||||||||||||||||||||||||||| ||||    
T  25045841 ttctaaccactaggctacttgaccaaaaaaaaaat 25045875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 978105 - 978064
Alignment:
Q  154 ttctaaccactaggctacttgaccaaaaaataaataaaataa 195  Q
    |||||||||||| ||||||||||||||||| ||| |||||||    
T  978105 ttctaaccactaagctacttgaccaaaaaaaaaaaaaaataa 978064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 13732913 - 13732950
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  13732913 tctaaccactaggctacttgaccaaaaaaaaaaaaaaa 13732950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 16119352 - 16119405
Alignment:
Q  131 ttattcacctt-aaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||| |||||||||| |||||| ||||||| ||||||||| ||||||    
T  16119352 ttattcaccttaaaaaaatgtgaattctagccactagactacttgacaaaaaaa 16119405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 26669684 - 26669619
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    ||||||||||||||| ||||| ||| |||||| ||||||  ||||||||| |||||| ||| ||||    
T  26669684 ccacttattcaccttgaaaaaggtgaattctagccactaaactacttgacaaaaaaaaaaaaaaaa 26669619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 9888493 - 9888465
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  9888493 tctaaccactaggctacttgaccaaaaaa 9888465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 12291244 - 12291296
Alignment:
Q  131 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||| ||| |||||  |||||||||||||||||||||||| || ||||||    
T  12291244 ttattcagcttgaaaaagatgtattctaaccactaggctacttaacaaaaaaa 12291296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 14949040 - 14948988
Alignment:
Q  131 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||| ||||| ||| ||| || ||||||||||| ||||||||||||    
T  14949040 ttattcaccttgaaaaaggtgaattatagccactaggctatttgaccaaaaaa 14948988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 16913869 - 16913841
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  16913869 tctaaccactaggctacttgaccaaaaaa 16913841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 17347324 - 17347380
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||||||||| ||  |||||||||| ||| |||| |||| ||||||    
T  17347324 ccacttattcaccttaaaaaaggtaaattctaaccattagactacctgacaaaaaaa 17347380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 20150004 - 20149948
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||| ||| |||||| | ||||| ||||||||| ||||||    
T  20150004 ccacttattcaccttgaaaaaggtgaattctatctactagcctacttgacaaaaaaa 20149948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 22182828 - 22182884
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||| ||||| ||| |||||| | ||||| ||||||||| ||||||    
T  22182828 ccacttattcaccttgaaaaaggtgaattctatctactagcctacttgacaaaaaaa 22182884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 28222964 - 28222992
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  28222964 tctaaccactaggctacttgaccaaaaaa 28222992  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 29204894 - 29204858
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccac 163  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  29204894 ccacttattcaccttaaaaaaagtgaattctaaccac 29204858  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 30668209 - 30668153
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 183  Q
    ||||||||||||||||||||||||| ||| ||  |||||| ||||||| | ||||||    
T  30668209 ccacttattcaccttaaaaaatgtgaattatagtcactagactacttgtcaaaaaaa 30668153  T

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Target: scaffold0366 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 828 - 792
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaataaataaa 191  Q
    |||| ||||||||||||||||||||||||||||||||    
T  828 tctagccactaggctacttgaccaaaaaataaataaa 792  T

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Target: scaffold0118 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 37353 - 37302
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgacca 178  Q
    ||||||||||||||||||||||||| | | || ||||||||||| |||||||    
T  37353 ccacttattcaccttaaaaaatgtgaaatttagccactaggctatttgacca 37302  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 1109 - 1174
Alignment:
Q  127 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 192  Q
    ||||||||||||||| ||||| ||| |||||| ||||||  ||||||||| |||||| ||| ||||    
T  1109 ccacttattcaccttgaaaaaggtgaattctagccactaaactacttgacaaaaaaaaaaaaaaaa 1174  T

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Target: scaffold0038 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 23462 - 23490
Alignment:
Q  155 tctaaccactaggctacttgaccaaaaaa 183  Q
    |||||||||||||||||||||||||||||    
T  23462 tctaaccactaggctacttgaccaaaaaa 23490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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