View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_high_36 (Length: 237)
Name: NF2524_high_36
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 32886883 - 32886966
Alignment:
| Q |
83 |
gagcctaaagtgaacctcataatattagtcagagaatgaaatctagttcgacacattgaggctcttacaaaaatttactcttta |
166 |
Q |
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| T |
32886883 |
gagcctaaagtgaacctcataatattagtcagagaatgaaatctagttcgacacattgaggctcttacaaaaatttacacttta |
32886966 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 32886537 - 32886581
Alignment:
| Q |
27 |
cacatgaaaagatgaagacatacatgctactctaccatttcaaaa |
71 |
Q |
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| T |
32886537 |
cacatgaaaagatgaagacatacatgctactctaccatttcaaaa |
32886581 |
T |
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