View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_high_39 (Length: 215)
Name: NF2524_high_39
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_high_39 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 4046445 - 4046248
Alignment:
| Q |
1 |
caagtttatgacgtgatagaaaccccaagacatatatatgttattatggagtatatggaatctggggagctttttgattacatagtagaaaagggtaggt |
100 |
Q |
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| T |
4046445 |
caagtttatgaggtgatagaaaccctaacgaatatatatgttattatggagtatatggaatctggggagctttttgattacatagtagaaaagggtaggt |
4046346 |
T |
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| Q |
101 |
tgcacgaagatgaagcgcgcaaattttttcagcaggtataaactctacggatttagattctctccttcgttcttcctacaacatgaatggtggacatt |
198 |
Q |
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| T |
4046345 |
tgcacgaagatgaagcgcgcaaattttttcagcaggtataaactctacggatttggattctctccttcgttctccctaccacatgaatggtgggcatt |
4046248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 17404197 - 17404321
Alignment:
| Q |
17 |
tagaaaccccaagacatatatatgttattatggagtatatggaatctggggagctttttgattacatagtagaaaagggtaggttgcacgaagatgaagc |
116 |
Q |
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| T |
17404197 |
tagaaaccccaactgatatttatgtggtgatggagtatgtgaaatctggagaactttttgattacatagtagaaaagggtaggcttcaagaagatgaagc |
17404296 |
T |
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| Q |
117 |
gcgcaaattttttcagcaggtataa |
141 |
Q |
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|||| || || |||||||||||| |
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| T |
17404297 |
tcgcagtttcttccagcaggtataa |
17404321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 4054846 - 4054742
Alignment:
| Q |
37 |
tatgttattatggagtatatggaatctggggagctttttgattacatagtagaaaagggtaggttgcacgaagatgaagcgcgcaaattttttcagcagg |
136 |
Q |
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| T |
4054846 |
tatgttgtgatggagtatgtgaaatccggagagctctttgattacattgtagaaaagggtaggctacaagaagatgaagcccgcagtttcttccagcagg |
4054747 |
T |
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| Q |
137 |
tataa |
141 |
Q |
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||||| |
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| T |
4054746 |
tataa |
4054742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 45866055 - 45865987
Alignment:
| Q |
73 |
tttgattacatagtagaaaagggtaggttgcacgaagatgaagcgcgcaaattttttcagcaggtataa |
141 |
Q |
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||||| ||||||| | |||||||||||||||| ||| | ||||| |||| ||| || |||||||||||| |
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| T |
45866055 |
tttgactacatagcacaaaagggtaggttgcaagaaaacgaagctcgcacattcttccagcaggtataa |
45865987 |
T |
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