View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2524_high_5 (Length: 442)
Name: NF2524_high_5
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 44515547 - 44515318
Alignment:
| Q |
18 |
atattaccttcactcgttttacacattccctccaaccgttgacgtgcaaaacggtttactgcgtattgtgtagaaagctcaattggatcttcaggcctaa |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44515547 |
atattaccttcactcattttacacattccctccaaccgttgacgtgcaaaacggtttactacgtattgtgtagaaagctcaattggatcttcaggcctaa |
44515448 |
T |
|
| Q |
118 |
gggcgcaattgatcacgctttcaacacaagaaacaacaccaaaaatagaacagacccctgttnnnnnnnntggtcatgagcaacaatagcaagctagaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
44515447 |
gggcgcaattgatcacgctttcaacacaagaaacaacaccaaaaatagaacagacccctgttaaaaaaaatggtcataagcaacaatagcaagctagaac |
44515348 |
T |
|
| Q |
218 |
aggtttaattcaaccaaacaccaagtctag |
247 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
|
|
| T |
44515347 |
aggtttaattcaactaaacaccaagtctag |
44515318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 305 - 429
Target Start/End: Complemental strand, 44515260 - 44515127
Alignment:
| Q |
305 |
cctatcaaaattatttatagagatagtaatgtggggtgttacatcctc---------ccctccttaaataattttttcctcaaaattgacctaatcttaa |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44515260 |
cctatcaaaattatttatagagatagtaatgtggggtgttacatccccgggtcccccccccccttaaataattttgtcctcaaaattgacctaatcttaa |
44515161 |
T |
|
| Q |
396 |
attaaatatattttccaaacaactacattaagaa |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
44515160 |
attaaatatattttccaaacaactacattaagaa |
44515127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 44509679 - 44509645
Alignment:
| Q |
305 |
cctatcaaaattatttatagagatagtaatgtggg |
339 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44509679 |
cctatcaaagttatttatagagatagtaatgtggg |
44509645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 26505341 - 26505297
Alignment:
| Q |
305 |
cctatcaaaattatttatagagatagtaatgtggggtgttacatc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
26505341 |
cctatcaaaattatttatagagatagtaatatgggatgttacatc |
26505297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University