View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_high_9 (Length: 397)
Name: NF2524_high_9
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 40406002 - 40406140
Alignment:
| Q |
12 |
aagaaagatgggtgaccgaaacaggaagtgaaccggtcatgttgttgttgtagaggtcaagaacttgaagattgaagaggttagagagttcttgagggag |
111 |
Q |
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| T |
40406002 |
aagaaagatgggtgaccgaaacaggaagtgaaccggtcatgttgttgttgtagaggtcaagaacttgaagattgaagaggttagagagttcttgagggag |
40406101 |
T |
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| Q |
112 |
ggtgccattgaacatgttgttggagaggttgagaaagcg |
150 |
Q |
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| T |
40406102 |
ggtgccattgaagatgttgttggagaggttgagaaagcg |
40406140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 286 - 381
Target Start/End: Original strand, 40406276 - 40406371
Alignment:
| Q |
286 |
aatgacgtggcgatgttgggaacatttgatgccgtaccaggaacagtaaggggtttttgggttccatgaggtgaggatgttttgtgggtcgtttgt |
381 |
Q |
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| T |
40406276 |
aatgacgtggcgatgttgggaacatttaatgccgtaccaggaacagtaaggggtttttgggttccatgaggtgaggatgttttgtgggtcgtttgt |
40406371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 40406169 - 40406197
Alignment:
| Q |
179 |
ggtattgggccggagaatttgttgtcggc |
207 |
Q |
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| T |
40406169 |
ggtattgggccggagaatttgttgtcggc |
40406197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 4977274 - 4977241
Alignment:
| Q |
44 |
ccggtcatgttgttgttgtagaggtcaagaactt |
77 |
Q |
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| T |
4977274 |
ccggtcatgttgttgttgtagagatcaagaactt |
4977241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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