View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2524_low_11 (Length: 375)
Name: NF2524_low_11
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 59 - 367
Target Start/End: Original strand, 47712018 - 47712323
Alignment:
| Q |
59 |
gtgttagtctttggtggatgatcaaggaaaatatagggaaagatctaacaaaagtttgccttcctgtttactttaatgagctttgaagaaatggagtgct |
158 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47712018 |
gtgttagtctttggtcaatgatcaaggaaaatatagggaaagatctaacaaaagtttgccttcctgtttactttaatgagctttgaagaaatggagtgct |
47712117 |
T |
|
| Q |
159 |
catatgtgcttgaccaagcatatgaatggggaaaaagggtaagtcatatttggctgacagatttatattaaggaagaaaatatgggcacttcaatatgat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47712118 |
catatgtgcttgaccaagcatatgaatggggaaaaagggtaagtcatatttggctgacagatttatattaag---gaaaatatgggcacttcaatatgat |
47712214 |
T |
|
| Q |
259 |
ctaagaaaactatttgataaaatattgtgcgatgttgatttttgtttactattagctctttcaatgctgtattggtgtgctcttcccttttactggatct |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
47712215 |
ctaagaaaactatttgataaaatattgtgcgatgttgatttttgtttactattagctctttcaatgctgtattggtgtgctcttcccttttgctgtatct |
47712314 |
T |
|
| Q |
359 |
gcctatgct |
367 |
Q |
| |
|
||||||||| |
|
|
| T |
47712315 |
gcctatgct |
47712323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 138 - 349
Target Start/End: Original strand, 32885852 - 32886074
Alignment:
| Q |
138 |
gctttgaagaaatggagtgctcatatgtgcttgaccaagcatatgaatggggaaaaagggtaagtcatatttggctgacagatttatatt---------- |
227 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32885852 |
gctttgaagaaatggagtactcatatctgcttgaccaagcatatgaatggggaaaaagggtaagtcagatttggctgacagatttatattgctcttccat |
32885951 |
T |
|
| Q |
228 |
aaggaagaaaatatgggcacttcaatatgatctaagaaaactatttgataaaatattgtgcgatgttgatttttgttta-ctattagctctttcaatgct |
326 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32885952 |
attaaggaaaatatgggcacttcaatatgatctaagaaaactatttgataaaatattgcgcgatgttgatttttgtttacctattagctctttcaatgga |
32886051 |
T |
|
| Q |
327 |
gtattggtgtgctcttccctttt |
349 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32886052 |
gtattggtgtgctcttccctttt |
32886074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 32885750 - 32885830
Alignment:
| Q |
59 |
gtgttagtctttggtggatgatcaaggaaaatatagggaaagatctaacaaaagtttgccttcctgtttactttaatgagc |
139 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32885750 |
gtgtcagtctttggtcaatgatcaaggataatatagggaaagatctaacaaaagtttgccttcctgtttactttaatgagc |
32885830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 24481563 - 24481624
Alignment:
| Q |
142 |
tgaagaaatggagtgctcatatgtgcttgaccaagcatatgaatggggaaaaagggtaagtc |
203 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
24481563 |
tgaagaaatggagtactcatatctccttgaccgagcttatgaatggggaaaaagagtaagtc |
24481624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University