View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2524_low_14 (Length: 338)

Name: NF2524_low_14
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2524_low_14
NF2524_low_14
[»] chr7 (2 HSPs)
chr7 (21-318)||(3597106-3597403)
chr7 (135-193)||(37358574-37358632)
[»] chr3 (1 HSPs)
chr3 (21-66)||(13363211-13363256)
[»] chr8 (3 HSPs)
chr8 (234-297)||(29512905-29512968)
chr8 (221-282)||(44140994-44141055)
chr8 (253-297)||(19649260-19649304)
[»] scaffold0009 (1 HSPs)
scaffold0009 (253-297)||(199360-199404)
[»] chr2 (2 HSPs)
chr2 (253-297)||(23377579-23377623)
chr2 (210-276)||(33019096-33019162)
[»] chr6 (2 HSPs)
chr6 (210-276)||(4910987-4911053)
chr6 (210-274)||(4908041-4908105)
[»] chr4 (2 HSPs)
chr4 (210-268)||(21691160-21691218)
chr4 (221-297)||(50061558-50061633)
[»] chr1 (3 HSPs)
chr1 (216-276)||(2099627-2099687)
chr1 (216-276)||(30557587-30557647)
chr1 (210-242)||(34875063-34875095)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 318
Target Start/End: Complemental strand, 3597403 - 3597106
Alignment:
Q  21 caatgtgtgattgttggataagcgcaagatcaagtactatatcagtgaggtatgtgttttagagatggcttttttggtttgtaatgcctgaactttgatt 120  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3597403 caatgtgtgattttcggataagcgcaagatcaagtactatatcagtgaggtatgtgttttagagatggctattttggtttgtaatgcctgaactttgatt 3597304  T
Q  121 ttgctattaatggtcatagcatgttcgactggttttgtgttgctatctttggaatgtaaatcgtataatataatgtttttaagaatcaattttgcatgaa 220  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  3597303 ttgttattaatggtcatagcatgttcaactggttttgtgttgctatctttggaatgtaaatcatataatataatgtttttaaaaatcaattttgcatgaa 3597204  T
Q  221 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacacgcacgcaaataggttctggta 318  Q
    | |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3597203 tgtatctaaagacaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacacgcacgcaaataggttctggta 3597106  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 37358632 - 37358574
Alignment:
Q  135 catagcatgttcgactggttttgtgttgctatctttggaatgtaaatcgtataatataa 193  Q
    ||||||| ||||  ||||||||||||||||||| ||| |||||||||  ||||||||||    
T  37358632 catagcaggttcagctggttttgtgttgctatcgttgtaatgtaaattatataatataa 37358574  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 13363256 - 13363211
Alignment:
Q  21 caatgtgtgattgttggataagcgcaagatcaagtactatatcagt 66  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||    
T  13363256 caatatgtgattgttggataagcccaagatcaagtactatatcagt 13363211  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 29512905 - 29512968
Alignment:
Q  234 aaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 297  Q
    |||||| || |||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||    
T  29512905 aaatcagttttagtcaaaatcacttttaaccaaaatcaattctccacaccgcacaaccaaacac 29512968  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 44141055 - 44140994
Alignment:
Q  221 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccac 282  Q
    |||||||||| | || |||||| |||| | ||||||||||||||||||| |||||| |||||    
T  44141055 tttatccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattctccccac 44140994  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 19649260 - 19649304
Alignment:
Q  253 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 297  Q
    ||||||||||||||||| |||| || |||||| ||||||||||||    
T  19649260 tcacttttaaccaaaatcaattttttccaccgcacaaccaaacac 19649304  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 199404 - 199360
Alignment:
Q  253 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 297  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||    
T  199404 tcacttttaaccaaaatcaattctttccaccgcacaaccaaacac 199360  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 23377579 - 23377623
Alignment:
Q  253 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 297  Q
    |||||||||||||||||||||| || |||||| ||||||||||||    
T  23377579 tcacttttaaccaaaattaattttttccaccgcacaaccaaacac 23377623  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 33019162 - 33019096
Alignment:
Q  210 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 276  Q
    |||| |||||||  ||||||| | ||||||||| |||| | ||||||||||||||||||| ||||||    
T  33019162 ttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattct 33019096  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 4910987 - 4911053
Alignment:
Q  210 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 276  Q
    |||| ||| ||| |||||||| | ||||||||| |||| | ||| ||||||||||||||||||||||    
T  4910987 ttttacataaatgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattct 4911053  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 4908041 - 4908105
Alignment:
Q  210 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaatt 274  Q
    |||| ||||| |||||||||| | ||||||||| |||  | ||||||||||||||||||| ||||    
T  4908041 ttttacatgattttatccaaacacaaatcacttttaggaagaatcacttttaaccaaaatcaatt 4908105  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 21691218 - 21691160
Alignment:
Q  210 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaa 268  Q
    |||| ||||||| |||||||| | ||||||||| |||| | ||||||||||||||||||    
T  21691218 ttttacatgaatatatccaaacacaaatcacttgtagtcagaatcacttttaaccaaaa 21691160  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 50061633 - 50061558
Alignment:
Q  221 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 297  Q
    |||||||||| | || |||||| |||| | ||||||||||||||||||| |||||| ||||| | || |||||||||    
T  50061633 tttatccaaacacaattcactt-tagtcagaatcacttttaaccaaaatcaattctccccactgaactaccaaacac 50061558  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 2099687 - 2099627
Alignment:
Q  216 atgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 276  Q
    |||||| |||||||| | ||||||||| || | ||||| ||||||||||||||| ||||||    
T  2099687 atgaatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattct 2099627  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 30557587 - 30557647
Alignment:
Q  216 atgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 276  Q
    |||||| |||||||| | ||||||||| |||| | | ||||||||||||||||| ||||||    
T  30557587 atgaatgtatccaaacacaaatcacttctagtcagagtcacttttaaccaaaatcaattct 30557647  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 34875095 - 34875063
Alignment:
Q  210 ttttgcatgaatttatccaaagaaaaatcactt 242  Q
    ||||||||||||||||||||||| |||||||||    
T  34875095 ttttgcatgaatttatccaaagataaatcactt 34875063  T

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