View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_low_2 (Length: 549)
Name: NF2524_low_2
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 11 - 533
Target Start/End: Original strand, 34043763 - 34044284
Alignment:
| Q |
11 |
ttatactaattattgaagctgtgattggtttttccctaagagatgatggaaaagaaacatttgggttcctaaaactaaataaatttgtattccaatgact |
110 |
Q |
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| T |
34043763 |
ttatactaattattgaagctgtggttggtttttccctaagagacgatggaaaagaaacatttgggttcctaaaactaaataaatttgt-ttccaatgact |
34043861 |
T |
|
| Q |
111 |
atgttatagagcattgtttttaaattcactaaatgaactcactggttgcacagagggacatgaatgtgaggataacccctccgatggtaatgagaatgga |
210 |
Q |
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| T |
34043862 |
atgttatagagcattgtttttaaattcactaaatgaactcactggttgcacagagggacatgaatgtgaggataactcctccgatggtaatgagaatgga |
34043961 |
T |
|
| Q |
211 |
gcttctcatcctccaagaacttcaatgggcaatgagatcggtgactgccttctgctttctgaaccactattacccttatttcaaaaaattctgtgatttt |
310 |
Q |
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| T |
34043962 |
gcttctcattctccaagaacttcaatgggcaatgagatcggtgactgccttctgctttctgaaccactattacccttatttcaaaaaattctgtggtttt |
34044061 |
T |
|
| Q |
311 |
aaacgccgtagcattaatgagataatagttcaagctcaaggaggtaaacagaattttctatgcattaatgatttcgtacttcaagctcattataatttgc |
410 |
Q |
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| T |
34044062 |
aaacgccgtagcattaatgagatcatagttcaagctcaaggaggtaaacagaattttctatgcattaatgatttcatacttcaagctcattataatttgc |
34044161 |
T |
|
| Q |
411 |
tatttctatgttttgtccaacagtcttgctaggagaatatatactaatattcattggaatttttctcttcttattctgcagagcacacctttgctcacta |
510 |
Q |
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| T |
34044162 |
tatttctatgttttgtccaacagtcttgcttggagaatatatactaatattcattggaatttttctcttcttattctgcagagcacacctttgctcacta |
34044261 |
T |
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| Q |
511 |
catgccttctcatattgcaatct |
533 |
Q |
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| T |
34044262 |
catgccttctcatattgcaatct |
34044284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 29 - 533
Target Start/End: Complemental strand, 4045739 - 4045246
Alignment:
| Q |
29 |
ctgtgattggtttttccctaagagatgatggaaaagaaacatttgggttcctaaaactaaataaatttgtattccaatgactatgttatagagcattgtt |
128 |
Q |
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|||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| | |
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| T |
4045739 |
ctgtgactggtttttcgctaagagacgatggaaaagaaacatttcggttcctaaaactaaataaatttatattccaat-----------agagcattgat |
4045651 |
T |
|
| Q |
129 |
tttaaattcactaaatgaactcactggttgcacagagggacatgaatgtgaggataacccctccgatggtaatgagaatggagcttctcatcctccaaga |
228 |
Q |
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| T |
4045650 |
tttaaattcactaaatgaacttactggttgcacagagggacatgaatgtgaggataactccgccgatggtaatgagaatggagcttctcattctccaaga |
4045551 |
T |
|
| Q |
229 |
acttcaatgggcaatgagatcggtgactgccttctgctttctgaaccactattacccttatttcaaaaaattctgtgattttaaacgccgtagcattaat |
328 |
Q |
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| T |
4045550 |
acttcaattgccaatgagatcagtgactgccttctgctttctgaactactattacccttatttcaaaaaattctgtggttttaaacgccatagcattaat |
4045451 |
T |
|
| Q |
329 |
gagataatagttcaagctcaaggaggtaaacagaattttctatgcattaatgatttcgtacttcaagctcattataatttgctatttctatgttttgtcc |
428 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||| |||| |
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| T |
4045450 |
gagatcatagttcaagctcaaggaggtaaacagaattttctatgcattaatgatttcatacttcaagctcgttagaatttgctatttctatgtttagtcc |
4045351 |
T |
|
| Q |
429 |
aacagtcttgctaggagaatatatactaatattcattggaatttttctcttcttattctgcagagcacacctttgctcactacatgccttctcatattgc |
528 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
4045350 |
aacagtcatgctaggagaatatatactaatattcattggaatttttctcttcttattctgcagagcacgcctttgctcactgcatgccttctcatattgc |
4045251 |
T |
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