View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_low_20 (Length: 307)
Name: NF2524_low_20
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 12872386 - 12872660
Alignment:
| Q |
16 |
gaatgcgtgaatttgtagttatcttgattgcatataggatatgtgtgcctaatttttcttaaggttgaacaattataaacctttatggtttgttcaatgt |
115 |
Q |
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| T |
12872386 |
gaatgtgtgaatttgtagttatcttgattgcatataggatatgtgtgc-taatttttcttaaggtttgacaattataaaccttcatggtttcttcaatct |
12872484 |
T |
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| Q |
116 |
tattcaaaatgaatgttctccacttacgcaattacattattagagattaagatcattcaattaagatcataatcgtgtttatatttgactcaacaatttc |
215 |
Q |
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| T |
12872485 |
tattgaaaatgaatgttcttctgttacgcaattacattattagagattaagatcattcaattaagatcatactcgtgtttatatttgactcaacaatttt |
12872584 |
T |
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| Q |
216 |
tctatcatataatactattatggcaaattttaaacaaatacttgcattccctcccatgaactatgatcctgggaaa |
291 |
Q |
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| T |
12872585 |
taaatcacataatattattatggcaaattttcaataaatacttgcattctctcccatgaattatgatcctgggaaa |
12872660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 105 - 303
Target Start/End: Original strand, 12879809 - 12880007
Alignment:
| Q |
105 |
ttgttcaatgttattcaaaatgaatgttctccacttacgcaattacattattagagattaagatcattcaattaagatcataatcgtgtttatatttgac |
204 |
Q |
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| T |
12879809 |
ttgttcaatgttattcaaaatgaatgttctccagttacgcaattacattattagagattaagatcattcaattaagatcataatcgtgtttatatttgac |
12879908 |
T |
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| Q |
205 |
tcaacaatttctctatcatataatactattatggcaaattttaaacaaatacttgcattccctcccatgaactatgatcctgggaaacatgcggttgtt |
303 |
Q |
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| T |
12879909 |
tcaacaatttctctatcatataatactattatggcaaattttaaacaaatacttgcattccctcccatgaactatgatcctgagaaacatgtggttgtt |
12880007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 11798735 - 11798470
Alignment:
| Q |
16 |
gaatgcgtgaatttgtagttatcttgattgcatataggatatgtgtgcctaatttttcttaaggttgaacaattataaacctttatggtttgttcaatgt |
115 |
Q |
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| T |
11798735 |
gaatgtgtgaatatgtagttatcttgattgcatatagaatgtgt---cctaatttttcttaaggttgaacaattataaacctttatggtttcttcaag-- |
11798641 |
T |
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| Q |
116 |
tattcaaaatgaatgttctccacttacgcaattacattattagagattaagatcattcaattaagatcataatcg-tgtttatatttgactcaacaattt |
214 |
Q |
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| T |
11798640 |
tattcaaaatgaatgttctcccgttaaacaattacattgttagagattaaggtcattcaattaaga-catacttggtgtttatatttgactcaacaattt |
11798542 |
T |
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| Q |
215 |
ctctatcatataatactattatggcaaattttaaacaaatacttgcattccctcccatgaactatgatcctg |
286 |
Q |
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| T |
11798541 |
ctaaatcatataatattattatggcaaattttcaacaaatacttgcattccctcacatgaattatgatcctg |
11798470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 12879745 - 12879808
Alignment:
| Q |
14 |
aggaatgcgtgaatttgtagttatcttgattgcatataggatatgtgtgcctaatttttcttaa |
77 |
Q |
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| T |
12879745 |
aggaatgcgtgaatttgtagttatcttgattgcatataggatatgtgtgcctaatttttcttaa |
12879808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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