View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_low_30 (Length: 257)
Name: NF2524_low_30
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 5042777 - 5042964
Alignment:
| Q |
1 |
tgtaatatgagaagacaattattaagcattagaaccacaaatagaataagttttactatatctgatgtgagtgacaagctcacacaaacggacatggatt |
100 |
Q |
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| T |
5042777 |
tgtaatatgagaagacaattattaagcattagaaccacaaatagaataagttttactatatctgatgtgagtgacaagctcacacaaacagacatggatt |
5042876 |
T |
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| Q |
101 |
tacagctagataattaaacnnnnnnnnnnnnntcaacaccgtattttttactttgatatgagaaatgatatttgtacaatcatgtaca |
188 |
Q |
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| T |
5042877 |
tacagctagataattaaacaaaaaagtaaaaatcaacaccgtattttttactttgatatgagaaatgatatttatacaatcatgtaca |
5042964 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 9311034 - 9311063
Alignment:
| Q |
154 |
tgatatgagaaatgatatttgtacaatcat |
183 |
Q |
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| T |
9311034 |
tgatatgagaaatgatatttgtacaatcat |
9311063 |
T |
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