View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2524_low_31 (Length: 254)

Name: NF2524_low_31
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2524_low_31
NF2524_low_31
[»] chr3 (4 HSPs)
chr3 (34-254)||(21660305-21660535)
chr3 (35-250)||(4207381-4207605)
chr3 (147-250)||(35202745-35202848)
chr3 (161-254)||(42009285-42009380)
[»] chr2 (6 HSPs)
chr2 (35-254)||(12072309-12072539)
chr2 (147-245)||(33280314-33280412)
chr2 (192-244)||(38599379-38599433)
chr2 (164-254)||(25222272-25222364)
chr2 (164-250)||(36059932-36060020)
chr2 (161-250)||(2063751-2063842)
[»] chr6 (7 HSPs)
chr6 (147-244)||(31234845-31234942)
chr6 (147-243)||(31243982-31244078)
chr6 (174-249)||(1327555-1327629)
chr6 (147-250)||(32055995-32056097)
chr6 (147-244)||(15035813-15035911)
chr6 (74-120)||(15035949-15035995)
chr6 (161-250)||(57634-57725)
[»] chr5 (6 HSPs)
chr5 (118-245)||(524881-525008)
chr5 (199-250)||(37029059-37029110)
chr5 (161-250)||(19099341-19099432)
chr5 (219-250)||(13423870-13423901)
chr5 (35-64)||(525031-525060)
chr5 (213-250)||(931380-931417)
[»] chr8 (5 HSPs)
chr8 (147-226)||(7773507-7773586)
chr8 (147-226)||(7790147-7790226)
chr8 (147-226)||(7810733-7810812)
chr8 (35-120)||(5971894-5971979)
chr8 (164-253)||(7858034-7858125)
[»] chr1 (7 HSPs)
chr1 (174-244)||(32810384-32810454)
chr1 (213-254)||(5560483-5560524)
chr1 (164-250)||(14084728-14084816)
chr1 (164-250)||(15441239-15441327)
chr1 (164-250)||(27703556-27703644)
chr1 (159-244)||(50371078-50371165)
chr1 (161-250)||(52055498-52055589)
[»] chr7 (2 HSPs)
chr7 (177-254)||(2445799-2445876)
chr7 (161-254)||(32956721-32956816)
[»] scaffold0482 (1 HSPs)
scaffold0482 (147-226)||(1687-1766)
[»] chr4 (3 HSPs)
chr4 (174-254)||(43154811-43154893)
chr4 (197-254)||(41305688-41305741)
chr4 (219-254)||(10575546-10575581)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 34 - 254
Target Start/End: Original strand, 21660305 - 21660535
Alignment:
Q  34 atgtttcttctttcttccaacagcaacgctattttcgttttcttctcaaactctctcgcattccctctcgacctccatctctcagcca----------ca 123  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  21660305 atgtttcttctttcttccaacagcaacgttatttttgttttcttctcaaactctctcgcattccctctcgacctccatctctcagccacgcgccgccaca 21660404  T
Q  124 aacatcggtaaccacctcgatctaacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtat 223  Q
    |||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  21660405 aacatcggtaaccatctagatctaacatacatctatcctttagactatatttctcctttttggacaagaatttaatgctatcaaaccatcaaatctgtat 21660504  T
Q  224 aatcacttaatcaatcaatttagaaagttat 254  Q
    |||||||||||||||||||||| ||| ||||    
T  21660505 aatcacttaatcaatcaatttaaaaaattat 21660535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 4207605 - 4207381
Alignment:
Q  35 tgtttcttctttcttccaacagcaacgctattttcgttttcttctcaaactctctcgcattccctctcgacctccatctctcag-------ccacaa-ac 126  Q
    ||||||||||||||||||||| |||  | | ||   | |||||||||| ||||||||| ||||||| |||||||| ||||||||       |||| | ||    
T  4207605 tgtttcttctttcttccaacaacaaaaccacttctttcttcttctcaacctctctcgcgttccctcccgacctccgtctctcagttgcgcgccaccacac 4207506  T
Q  127 atcggtaaccacctcga-tctaacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtataa 225  Q
    |  |||||||||| | | || ||||| ||| |||| ||| |||| || |||||||||||||||||||||| |||||||||||| |||||||| |||||||    
T  4207505 actggtaaccaccaccaatcgaacatgcatatatcatttcgactctagttctcctttttggacaagaattcaatgctatcaaaccatccaatttgtataa 4207406  T
Q  226 tcacttaatcaatcaatttagaaag 250  Q
    ||||||||||| ||||||| |||||    
T  4207405 tcacttaatcattcaatttggaaag 4207381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 35202848 - 35202745
Alignment:
Q  147 aacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtataatcacttaatcaatcaatttag 246  Q
    ||||| |||||||| | |||||| || || ||||||||||| |||||||||||  ||||||| |||||||| |||||||| ||||||||| ||||||| |    
T  35202848 aacattcatctatcctatagactttagttatcctttttggataagaatttaattttatcaaaccatccaatttgtataattacttaatcagtcaattttg 35202749  T
Q  247 aaag 250  Q
    ||||    
T  35202748 aaag 35202745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 42009380 - 42009285
Alignment:
Q  161 ttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatc--caatctgtataatcacttaatcaatcaatttagaaagttat 254  Q
    ||||||||| || |||| |||| ||||||  ||||| ||||||||||| || |  |||| |||||||||||||||||| |||||||| ||||||||    
T  42009380 ttttagactttagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaagttat 42009285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 254
Target Start/End: Original strand, 12072309 - 12072539
Alignment:
Q  35 tgtttcttctttcttccaacagcaacgctattttcgttttcttctcaaactctctcgcattccctctcgacctccatctctcagcca----------caa 124  Q
    |||||||| |||||||||||| |||||||| |||  | | |||||||||||||| ||  ||||||| ||||||||||||||||||||          ||     
T  12072309 tgtttcttatttcttccaacaacaacgctacttttttctccttctcaaactctcgcgtgttccctcccgacctccatctctcagccatgcactaccacac 12072408  T
Q  125 acatcggtaaccacctcga-tctaacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtat 223  Q
    |||  | |||||||| | | || |||||||||||||| |||||||| || |||||||||||||||||||||| |||| ||||||| ||| |||| | |||    
T  12072409 acactgataaccaccaccaatccaacatacatctatcctttagactgtagttctcctttttggacaagaattcaatgttatcaaaccattcaatttatat 12072508  T
Q  224 aatcacttaatcaatcaatttagaaagttat 254  Q
    |||||||||||||||||||||| ||||||||    
T  12072509 aatcacttaatcaatcaatttaaaaagttat 12072539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 33280412 - 33280314
Alignment:
Q  147 aacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtataatcacttaatcaatcaattta 245  Q
    |||||||||||||  |||| ||| || || |||||| |||||||||||| || |||||||||||||||||| | |||||| |||| |||||||||||||    
T  33280412 aacatacatctattatttatactttagttatcctttctggacaagaattcaacgctatcaaatcatccaatttctataattacttgatcaatcaattta 33280314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 38599379 - 38599433
Alignment:
Q  192 aatttaatgctatcaaatcatc--caatctgtataatcacttaatcaatcaattt 244  Q
    ||||| |||||||||||||||   |||| ||||||||||||||||||||||||||    
T  38599379 aatttgatgctatcaaatcattatcaatttgtataatcacttaatcaatcaattt 38599433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 25222272 - 25222364
Alignment:
Q  164 tagactatatttctcctttttggacaagaatttaatgctatcaaatcatcc--aatctgtataatcacttaatcaatcaatttagaaagttat 254  Q
    |||||| || |||||||||||| |||  |||   || |||||||||||| |  ||| |||||||||||||||| | |||||||||||||||||    
T  25222272 tagactttagttctcctttttgtacataaatcggatcctatcaaatcattcctaatttgtataatcacttaattagtcaatttagaaagttat 25222364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 36060020 - 36059932
Alignment:
Q  164 tagactatatttctcctttttggacaagaatttaatgctatcaaatcatc--caatctgtataatcacttaatcaatcaatttagaaag 250  Q
    |||||| || |||| |||||| ||||| ||||| ||||||||||| || |  |||| |||||||||||||||||| | |||||| ||||    
T  36060020 tagactctagttctactttttagacaaaaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagttaatttaaaaag 36059932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 2063751 - 2063842
Alignment:
Q  161 ttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatcc--aatctgtataatcacttaatcaatcaatttagaaag 250  Q
    ||||||||| || || ||||||||| |||  ||| |||| |||||||| || ||  ||| |||||||||||||||||| ||||||| |||||    
T  2063751 ttttagactctagttttcctttttgtacataaatataatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaag 2063842  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 31234845 - 31234942
Alignment:
Q  147 aacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtataatcacttaatcaatcaattt 244  Q
    ||||||||| |||| |||||||| || |||| |||||| |||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||    
T  31234845 aacatacatttatcctttagactctagttctactttttagacaagaattcaatgctatcaaaccatccaatttgtataatcacttaatcaatcaattt 31234942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 31243982 - 31244078
Alignment:
Q  147 aacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtataatcacttaatcaatcaatt 243  Q
    ||||||||| |||| |||||||| || |||| |||||| |||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||    
T  31243982 aacatacatttatcctttagactctagttctactttttagacaagaattcaatgctatcaaaccatccaatttgtataatcacttaatcaatcaatt 31244078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 1327555 - 1327629
Alignment:
Q  174 ttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtataatcacttaatcaatcaatttagaaa 249  Q
    ||||||||||||||||| |||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  1327555 ttctcctttttggacaataattcaatgctatcat-tcatccaatttgtataatcacttaatcaatcaatttagaaa 1327629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 32055995 - 32056097
Alignment:
Q  147 aacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtataatcacttaatcaatcaatttag 246  Q
    ||||| |||||||| | || ||| || ||||| |||||| ||||||||| |||| ||||||| |||||||| |||||||||||||||||| ||||||||     
T  32055995 aacatccatctatcctctaaactctagttctcatttttgaacaagaattcaatgttatcaaaccatccaat-tgtataatcacttaatcactcaatttaa 32056093  T
Q  247 aaag 250  Q
    ||||    
T  32056094 aaag 32056097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 15035911 - 15035813
Alignment:
Q  147 aacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaa-tctgtataatcacttaatcaatcaattt 244  Q
    ||||| |||||||| | |||||| || |||||||||||||||||||||| |||||||||||| ||| ||| | |||||||||| |||| || |||||||    
T  15035911 aacattcatctatcctatagactttagttctcctttttggacaagaattcaatgctatcaaaccattcaattttgtataatcatttaaccagtcaattt 15035813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 15035995 - 15035949
Alignment:
Q  74 tcttctcaaactctctcgcattccctctcgacctccatctctcagcc 120  Q
    ||||||||| ||||||||| ||||||  |||||||||||||||||||    
T  15035995 tcttctcaacctctctcgcgttcccttccgacctccatctctcagcc 15035949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 57634 - 57725
Alignment:
Q  161 ttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatcca--atctgtataatcacttaatcaatcaatttagaaag 250  Q
    ||||| ||| || |||||||||||| |||  ||| | || |||||||| || |||  || |||||||||||||||||| |||||||||||||    
T  57634 ttttaaactctagttctcctttttgtacataaatctgatcctatcaaaccacccataatttgtataatcacttaatcagtcaatttagaaag 57725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 525008 - 524881
Alignment:
Q  118 gccacaaacatcggtaaccacctcga-tctaacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaa 216  Q
    |||||| ||| ||||||||||| | | || |||| ||||||||| |||||||| || |||||||||||||| ||||||| |||||| ||||| |||| ||    
T  525008 gccacatacaccggtaaccaccaccaatccaacacacatctatcctttagactctagttctcctttttggaaaagaattcaatgctctcaaaccatctaa 524909  T
Q  217 tctgtataatcacttaatcaatcaattta 245  Q
    | | |||||||||||||||||||||||||    
T  524908 t-tttataatcacttaatcaatcaattta 524881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 37029110 - 37029059
Alignment:
Q  199 tgctatcaaatcatccaatctgtataatcacttaatcaatcaatttagaaag 250  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  37029110 tgctatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaag 37029059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 19099432 - 19099341
Alignment:
Q  161 ttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatcc--aatctgtataatcacttaatcaatcaatttagaaag 250  Q
    |||||||||||| |||||||||||| |||  ||| | || |||||||| |||||  ||| |||||||||||||||||| |||||||| ||||    
T  19099432 ttttagactatagttctcctttttgtacataaatctgatcctatcaaaccatccctaatttgtataatcacttaatcagtcaatttaaaaag 19099341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 250
Target Start/End: Original strand, 13423870 - 13423901
Alignment:
Q  219 tgtataatcacttaatcaatcaatttagaaag 250  Q
    ||||||||||||||||||||||||||||||||    
T  13423870 tgtataatcacttaatcaatcaatttagaaag 13423901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 525060 - 525031
Alignment:
Q  35 tgtttcttctttcttccaacagcaacgcta 64  Q
    ||||||||||||||||||||||||||||||    
T  525060 tgtttcttctttcttccaacagcaacgcta 525031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 931380 - 931417
Alignment:
Q  213 ccaatctgtataatcacttaatcaatcaatttagaaag 250  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  931380 ccaatttgtataatcacttaatcagtcaatttagaaag 931417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 7773507 - 7773586
Alignment:
Q  147 aacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtataat 226  Q
    |||||||||||||| |||| ||| || ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  7773507 aacatacatctatcctttatactctagttctcctttttggacaagaattttatgctatcaaaccatccaatttgtataat 7773586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 7790147 - 7790226
Alignment:
Q  147 aacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtataat 226  Q
    |||||||||||||| |||| ||| || ||||||||| ||||||| ||||| || |||||||| |||||||| ||||||||    
T  7790147 aacatacatctatcctttatactgtagttctcctttgtggacaaaaattttattctatcaaaccatccaatttgtataat 7790226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 7810733 - 7810812
Alignment:
Q  147 aacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtataat 226  Q
    |||||||||||||| |||| ||| || ||||||||| ||||||| ||||| || |||||||| |||||||| ||||||||    
T  7810733 aacatacatctatcctttatactgtagttctcctttgtggacaaaaattttattctatcaaaccatccaatttgtataat 7810812  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 5971979 - 5971894
Alignment:
Q  35 tgtttcttctttcttccaacagcaacgctattttcgttttcttctcaaactctctcgcattccctctcgacctccatctctcagcc 120  Q
    ||||||||||||||||||| |||||| ||||||   | |||||||||| |||||||  |||||||| | | |||||||||| ||||    
T  5971979 tgtttcttctttcttccaatagcaacactatttctttcttcttctcaacctctctcatattccctcccaatctccatctcttagcc 5971894  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 7858034 - 7858125
Alignment:
Q  164 tagactatatttctcctttttggacaagaatttaatgctatcaaatcatcc--aatctgtataatcacttaatcaatcaatttagaaagtta 253  Q
    |||||| || |||||||||||| |||  |||   || ||||||||||| ||  ||| |||||||||||||||||| ||||||| ||||||||    
T  7858034 tagactctagttctcctttttgaacataaatcggatcctatcaaatcacccctaatttgtataatcacttaatcagtcaatttggaaagtta 7858125  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 32810454 - 32810384
Alignment:
Q  174 ttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtataatcacttaatcaatcaattt 244  Q
    |||| |||||||||||||||||||||||||| |||  ||| ||| || |||||||||||||||||||||||    
T  32810454 ttcttctttttggacaagaatttaatgctattaaactatctaatttgaataatcacttaatcaatcaattt 32810384  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 5560483 - 5560524
Alignment:
Q  213 ccaatctgtataatcacttaatcaatcaatttagaaagttat 254  Q
    ||||| |||||||||||||||||| |||||||| ||||||||    
T  5560483 ccaatttgtataatcacttaatcagtcaatttaaaaagttat 5560524  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 14084816 - 14084728
Alignment:
Q  164 tagactatatttctcctttttggacaagaatttaatgctatcaaatcatcc--aatctgtataatcacttaatcaatcaatttagaaag 250  Q
    |||||| || |||||||||||| |||  ||| | || ||||||||||| ||  ||  |||||||||||||||||| |||||||||||||    
T  14084816 tagactctagttctcctttttgtacataaatctgatcctatcaaatcacccctaaaatgtataatcacttaatcagtcaatttagaaag 14084728  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 15441239 - 15441327
Alignment:
Q  164 tagactatatttctcctttttggacaagaatttaatgctatcaaatcatc--caatctgtataatcacttaatcaatcaatttagaaag 250  Q
    |||||| || ||||||||| | ||||  ||| ||||||||||||| || |  |||| |||||||||||||||||| |||||||| ||||    
T  15441239 tagactctagttctcctttctagacataaatataatgctatcaaaccacctacaatttgtataatcacttaatcactcaatttataaag 15441327  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 27703644 - 27703556
Alignment:
Q  164 tagactatatttctcctttttggacaagaatttaatgctatcaaatcatcc--aatctgtataatcacttaatcaatcaatttagaaag 250  Q
    |||||| || ||||| |||||| |||  ||||| ||||||||||| || ||  ||| |||||||||||||||||| ||||||| |||||    
T  27703644 tagactctagttctcttttttgaacataaatttgatgctatcaaaccacccccaatttgtataatcacttaatcagtcaatttggaaag 27703556  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 50371078 - 50371165
Alignment:
Q  159 tcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatcc--aatctgtataatcacttaatcaatcaattt 244  Q
    |||| |||||| || ||||||||| |||| |  || || |||||||||||||| ||  ||| |||||||||||||||||| |||||||    
T  50371078 tcttctagactctagttctcctttctggatataaagttgatgctatcaaatcaccctcaatttgtataatcacttaatcagtcaattt 50371165  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 52055498 - 52055589
Alignment:
Q  161 ttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatcca--atctgtataatcacttaatcaatcaatttagaaag 250  Q
    ||||||||| || |||||||||||| |||  ||| ||||  |||||||  |||||  || | |||||||||||||||||||||||| |||||    
T  52055498 ttttagactctagttctcctttttgtacataaatctaatcatatcaaactatccataatttatataatcacttaatcaatcaatttggaaag 52055589  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 2445876 - 2445799
Alignment:
Q  177 tcctttttggacaagaatttaatgctatcaaatcatccaatctgtataatcacttaatcaatcaatttagaaagttat 254  Q
    ||||||||  |||||||||| ||||||||||| ||| |||| ||||||||||||||||| ||||| ||| || |||||    
T  2445876 tcctttttttacaagaatttgatgctatcaaaccattcaatttgtataatcacttaatctatcaaattaaaaggttat 2445799  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 32956721 - 32956816
Alignment:
Q  161 ttttagactatatttctcctttttggacaagaatttaatgctatcaaatca--tccaatctgtataatcacttaatcaatcaatttagaaagttat 254  Q
    ||||||||| || ||||||||| ||||||  ||| | ||||||||||| ||   ||||| | |||||||| ||||||| |||||||| ||||||||    
T  32956721 ttttagactctagttctcctttctggacataaatctgatgctatcaaaccacccccaatttttataatcatttaatcagtcaatttataaagttat 32956816  T

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Target: scaffold0482 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 1766 - 1687
Alignment:
Q  147 aacatacatctatcttttagactatatttctcctttttggacaagaatttaatgctatcaaatcatccaatctgtataat 226  Q
    |||||||||||||| |||| | | || ||||||||| ||||||| ||||| || |||||||| |||||||| ||||||||    
T  1766 aacatacatctatcctttatattgtagttctcctttgtggacaaaaattttattctatcaaaccatccaatttgtataat 1687  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 43154893 - 43154811
Alignment:
Q  174 ttctcctttttggacaagaatttaatgctatcaaatcatc--caatctgtataatcacttaatcaatcaatttagaaagttat 254  Q
    |||| |||||||||||  ||||| ||||||||||| || |  |||| |||||||||||||||||| |||||||| ||||||||    
T  43154893 ttctactttttggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaagttat 43154811  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 41305688 - 41305741
Alignment:
Q  197 aatgctatcaaatcatccaatctgtataatcacttaatcaatcaatttagaaagttat 254  Q
    ||||||||||||||||||||| |||||||||    |||||||||||||||||| ||||    
T  41305688 aatgctatcaaatcatccaatttgtataatc----aatcaatcaatttagaaaattat 41305741  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 10575581 - 10575546
Alignment:
Q  219 tgtataatcacttaatcaatcaatttagaaagttat 254  Q
    |||||||||||||||||| |||||||||||||||||    
T  10575581 tgtataatcacttaatcagtcaatttagaaagttat 10575546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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