View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2524_low_33 (Length: 252)

Name: NF2524_low_33
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2524_low_33
NF2524_low_33
[»] chr1 (1 HSPs)
chr1 (118-244)||(47192365-47192491)
[»] chr8 (8 HSPs)
chr8 (118-244)||(1668705-1668831)
chr8 (118-244)||(16659499-16659625)
chr8 (118-244)||(38520619-38520745)
chr8 (118-244)||(22015513-22015639)
chr8 (19-64)||(1668885-1668930)
chr8 (19-64)||(16659679-16659724)
chr8 (19-64)||(38520520-38520565)
chr8 (22-64)||(22015693-22015735)
[»] chr4 (6 HSPs)
chr4 (118-244)||(23217613-23217739)
chr4 (118-244)||(45153398-45153524)
chr4 (118-244)||(45144618-45144744)
chr4 (19-64)||(23217514-23217559)
chr4 (19-64)||(45144798-45144843)
chr4 (19-64)||(45153578-45153623)
[»] chr3 (4 HSPs)
chr3 (118-244)||(2338209-2338335)
chr3 (118-244)||(21239767-21239893)
chr3 (19-64)||(2338110-2338155)
chr3 (19-64)||(21239947-21239992)
[»] chr5 (2 HSPs)
chr5 (118-244)||(3174843-3174969)
chr5 (19-64)||(3175023-3175068)
[»] chr2 (4 HSPs)
chr2 (118-244)||(3934686-3934812)
chr2 (118-244)||(38975059-38975185)
chr2 (19-64)||(3934588-3934632)
chr2 (19-56)||(38974966-38975003)
[»] scaffold0393 (2 HSPs)
scaffold0393 (118-207)||(10948-11037)
scaffold0393 (19-64)||(10849-10894)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 47192491 - 47192365
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  47192491 tggcagcaaggcccggacaggtccaaatactaaaccatgatctctcctatggctcttgctctatctagttgtcaaactcaaagttcttttctaaggtttt 47192392  T
Q  218 acttgatcataaataactattcttctc 244  Q
    |||||||||||||||||||||||||||    
T  47192391 acttgatcataaataactattcttctc 47192365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 1668831 - 1668705
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  1668831 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 1668732  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  1668731 attttatcataaataactcttcttctc 1668705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 16659625 - 16659499
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  16659625 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 16659526  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  16659525 attttatcataaataactcttcttctc 16659499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 38520619 - 38520745
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  38520619 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 38520718  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  38520719 attttatcataaataactcttcttctc 38520745  T

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Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 22015639 - 22015513
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||     
T  22015639 tggcagtaaggcacagacagctccgaatactaaactatgatctctcctatggctcttgctctagctagttgtgaaactcaaagttcttttctaaggtttc 22015540  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||| ||||||| ||||||||    
T  22015539 attttatcatgaataactcttcttctc 22015513  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 1668930 - 1668885
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  1668930 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 1668885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 16659724 - 16659679
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  16659724 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 16659679  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 38520520 - 38520565
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  38520520 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 38520565  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 22015735 - 22015693
Alignment:
Q  22 ccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  22015735 ccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 22015693  T

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Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 23217613 - 23217739
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  23217613 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 23217712  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  23217713 attttatcataaataactcttcttctc 23217739  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 45153524 - 45153398
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  45153524 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 45153425  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  45153424 attttatcataaataactcttcttctc 45153398  T

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Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 45144744 - 45144618
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  45144744 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 45144645  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||| ||||||| ||||||||    
T  45144644 attttatcatgaataactcttcttctc 45144618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 23217514 - 23217559
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  23217514 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 23217559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 45144843 - 45144798
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  45144843 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 45144798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 45153623 - 45153578
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  45153623 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 45153578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 2338209 - 2338335
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  2338209 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 2338308  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  2338309 attttatcataaataactcttcttctc 2338335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 21239893 - 21239767
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||     
T  21239893 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttcaaaggtttc 21239794  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  21239793 attttatcataaataactcttcttctc 21239767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 2338110 - 2338155
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  2338110 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 2338155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 21239992 - 21239947
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  21239992 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 21239947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 3174969 - 3174843
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  3174969 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 3174870  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||| ||||||| ||||||||    
T  3174869 attttatcatgaataactcttcttctc 3174843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 3175068 - 3175023
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  3175068 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 3175023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 3934686 - 3934812
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  3934686 tggcagtaaggcacagacagctctgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 3934785  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  3934786 attttatcataaataactcttcttctc 3934812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 38975059 - 38975185
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||     
T  38975059 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctcaagctagttgtcaaactcaaagttcttttctaaggtttc 38975158  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||| ||||||| ||||||||    
T  38975159 attttatcatgaataactcttcttctc 38975185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 3934588 - 3934632
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  3934588 caaccaccaaagacagaaaa-cagctgcaagcagcgctgatctgct 3934632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 38974966 - 38975003
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgct 56  Q
    |||||||||||||||||||||||| |||||||||||||    
T  38974966 caaccaccaaagacagaaaaacagctgcaagcagcgct 38975003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 10948 - 11037
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttctttt 207  Q
    |||||| ||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10948 tggcagtaaggcacagacagctctaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttctttt 11037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 10849 - 10894
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  10849 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 10894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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