View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2524_low_34 (Length: 252)

Name: NF2524_low_34
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2524_low_34
NF2524_low_34
[»] chr1 (2 HSPs)
chr1 (155-236)||(35818077-35818158)
chr1 (13-109)||(35817984-35818078)
[»] chr7 (1 HSPs)
chr7 (137-221)||(47703367-47703451)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 35818077 - 35818158
Alignment:
Q  155 tttcgccaaaccagctttgacaaattctccattactaaatgagcagcactcccatctttaaagaagattgtaataaaaaatg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35818077 tttcgccaaaccagctttgacaaattctccattactaaatgagcagcactcccatctttaaagaagattgtaataaaaaatg 35818158  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 35817984 - 35818078
Alignment:
Q  13 gaacctgtgtaccacatatatattttttgttttcgagaaaggataggtgggttaatatgtacctattaaaagacctacatgcaataccagcagtgtt 109  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  35817984 gaacctgtgtaccacattttt--tttttgttttcgagaaaggataggtgggttagtatgtacctattaaaagacctacatgcaatatcagcagtgtt 35818078  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 47703451 - 47703367
Alignment:
Q  137 ataacaccaatgctctaatttcgccaaaccagctttgacaaattctccattactaaatgagcagcactcccatctttaaagaaga 221  Q
    ||||||||||||||| ||||  |||| ||||||||| ||| |||||||||||||||||||||||||||||| |||| | ||||||    
T  47703451 ataacaccaatgctccaattcagccagaccagctttcacatattctccattactaaatgagcagcactcccgtcttaagagaaga 47703367  T

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