View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_low_36 (Length: 249)
Name: NF2524_low_36
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 2335724 - 2335869
Alignment:
| Q |
80 |
aaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaatttttccatgttcacacaagacttttatatctaatttcgtcaaaca |
179 |
Q |
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| T |
2335724 |
aaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaatttttccatcttcacactagacttttatatctaatttcgtcaaaca |
2335823 |
T |
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| Q |
180 |
tgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat |
225 |
Q |
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| T |
2335824 |
tgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat |
2335869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 2319322 - 2319473
Alignment:
| Q |
75 |
ccttcaaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaat-ttttccatgttcacacaagacttttatatctaatttcgt |
173 |
Q |
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| T |
2319322 |
ccttcaaagaatgatgcaaaggagaaaaacttgtctccttcataaatgatgctattaaatattttccatgttcacacaagacttttatatctaatgtcat |
2319421 |
T |
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| Q |
174 |
caaacatgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat |
225 |
Q |
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| T |
2319422 |
gatacatgtgtagtactatcaatgagtctaatcattcaatcgtaccgaatat |
2319473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 2326134 - 2326305
Alignment:
| Q |
56 |
aaaattgttgtcatgtctaccttcaaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaa--tttttccatgttcacacaag |
153 |
Q |
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| T |
2326134 |
aaaattgttgtcatttcc-ctttcaaagaatgatgcataggagaaatacatgtatccttcgtaaatgatgcttttacatttttttctatgttcacataag |
2326232 |
T |
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| Q |
154 |
acttttatatct-aatttcgtcaaacatgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat |
225 |
Q |
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| T |
2326233 |
acttttatttctaaatgtcgtgacacatgtgtagcaccatcaattagtctaatcattatatcgtacagaatat |
2326305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 2335694 - 2335723
Alignment:
| Q |
1 |
atcttacttcttttggtccagcatgtacca |
30 |
Q |
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| T |
2335694 |
atcttacttcttttggtccagcatgtacca |
2335723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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