View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_low_4 (Length: 448)
Name: NF2524_low_4
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Complemental strand, 32871642 - 32871226
Alignment:
| Q |
14 |
atattccataaaatcacttctaaaaggaacactactctccaatatggggctcgagacgtggtggcaagtaatagctgcttgccaacaagtcacaagggta |
113 |
Q |
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| T |
32871642 |
atattccataaaatcacttctaaaaggaacactactctccaatatggggctcgagacgtggtgacaagtaatagctgcttgccaacaagtcacaagggta |
32871543 |
T |
|
| Q |
114 |
ttcactgtctcctatagagacggaccaacacctcattaattaacctaaaggttaaaattaaccaaatattgcggaagagtaatgtagcttataggtagat |
213 |
Q |
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| T |
32871542 |
ttcactgtctcctatagagacggaccaacacctcattaattaacctaaaggttaaaattaaccaaatattgcggaagagtaatgtagcttataggtagat |
32871443 |
T |
|
| Q |
214 |
tcagttctcaaaagaagaacaaagaaaaagcctacaaaaccactcttactagtagcctttcagtttcaccaatgatcatgagatgaaagcttatcttctc |
313 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32871442 |
tcagttctcaaaaaaagaacaaagaaaaagcctacaaaaccactcttacaagtagcctttcagtttcaccaatgatcatgagatgaaagcttatcttctc |
32871343 |
T |
|
| Q |
314 |
ttttactaccctttgaaaatgactcaaccttccatcattatgaatgatggagacataggatgccacatagagctccttggtcatggacatttttgttgtt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32871342 |
ttttactaccctttgaaaatgactcaaccttccatcattatgaatgatggagacataggatgccacatagagctccttggtcatggacatttttgttgtt |
32871243 |
T |
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| Q |
414 |
gagaataaggttgtctt |
430 |
Q |
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||||||||||||||||| |
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| T |
32871242 |
gagaataaggttgtctt |
32871226 |
T |
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