View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_low_40 (Length: 237)
Name: NF2524_low_40
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6135353 - 6135571
Alignment:
| Q |
1 |
ttggtacatcagttaatgagcggaaattagtaagggatgtagctgccttagctaaagtgtggacagtctcgttggcatgtatcctagtaaactcaatccg |
100 |
Q |
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| T |
6135353 |
ttggtacatcagttaatgagcggaaattagtaagagatgtagctgccttagctaaagtgtgggcagtctcattgg-atgtatcctagtaaactcaatccg |
6135451 |
T |
|
| Q |
101 |
tagtttacaaaatgttgaatatagattctatgacaatctaaaaggatagctcctaaatccgagtagtattttgcgaaacttggacaccgtattctttata |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6135452 |
tagtttacaaaatgtcgaatatagattctatgacaatctaaaaggatagctcctaaatccgagtagt-ttttgcgaaacttggacaccgtattctttata |
6135550 |
T |
|
| Q |
201 |
aagttgttcttattagttaac |
221 |
Q |
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|
||||||||||||||||||||| |
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| T |
6135551 |
aagttgttcttattagttaac |
6135571 |
T |
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