View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_low_42 (Length: 228)
Name: NF2524_low_42
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 11325366 - 11325171
Alignment:
| Q |
20 |
attcactaacacaagtaactaatattctgatcgttatataatattcttcactttctttgttaaattaatataataatgcttatgttaatcagtatcaaca |
119 |
Q |
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| T |
11325366 |
attcactaacataagtaactaatattctgatcgttatataatattcttcactttctttgttaaattaatataataatgcttatgttaatcagtatcaaca |
11325267 |
T |
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| Q |
120 |
ttttatatcttactttactcatgtccatggttaatctatgttgaatttgtttcagcttcttacaatgatattcatgaataatttcctatattcttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11325266 |
ttttatatcttactttactcatgtccatggttaatctatgttgaatttgtttcagcttcttacaatgatattcatgaataatttcctatattcttg |
11325171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 11483387 - 11483192
Alignment:
| Q |
20 |
attcactaacacaagtaactaatattctgatcgttatataatattcttcactttctttgttaaattaatataataatgcttatgttaatcagtatcaaca |
119 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11483387 |
attcactaacataagtaactaatattctgatcgttatataatattcttcactttctttgttaaattaatataataatgcttatgttaatcagtatcaaca |
11483288 |
T |
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| Q |
120 |
ttttatatcttactttactcatgtccatggttaatctatgttgaatttgtttcagcttcttacaatgatattcatgaataatttcctatattcttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11483287 |
ttttatatcttactttactcatgtccatggttaatctatgttgaatttgtttcagcttcttacaatgatattcatgaataatttcctatattcttg |
11483192 |
T |
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