View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_low_5 (Length: 443)
Name: NF2524_low_5
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 105 - 432
Target Start/End: Complemental strand, 52247217 - 52246888
Alignment:
| Q |
105 |
gcccactcctagtagtgatacaaatacatagtgtctcctcttttttctattattggaagnnnnnnnnnnnnnnnnnnnnctctattaagagggattttgt |
204 |
Q |
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| T |
52247217 |
gcccactcctagtagtgatacaaatacatagtttctcctcttttttctattattggaagtttttttttcctctttttc-ctctattaagagggattttgt |
52247119 |
T |
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| Q |
205 |
gcgaattaaagcatgtctttggtaatttctttctcctttctactttctcaaacatatattgcatctaaattatattattagttctcattctaaaatttca |
304 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52247118 |
gcgaattaaagcatgtgtttggtaatttctttctcctttctactttctcaaacatatattgcatctaaattatattattagttctcattctaaaatttca |
52247019 |
T |
|
| Q |
305 |
aataaaaaccatttgcatg-nnnnnnngttatcatta--gtgtttgtgagtgttgtaaatctcaaagtatcgaatttgttttctatatatcaaaaaagca |
401 |
Q |
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||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52247018 |
aataaaaaccatttgcatgttttttttgttaccattagtgtgtttgtgagtgttgtaaatctcaaagtatcgaatttgttttctatatatcaaaaaagca |
52246919 |
T |
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| Q |
402 |
aaagggaaaccatttacatggcaatagtatt |
432 |
Q |
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| T |
52246918 |
aaagggaaaccatttacatggcaatagtatt |
52246888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 52247340 - 52247274
Alignment:
| Q |
20 |
ccaactgttttgaatcgatacgaactgtttttaactgaatttcaaaattgttaataatagttcagtt |
86 |
Q |
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| T |
52247340 |
ccaactgttttgaatcgatatgaacggtttttaactgagtttcaaaattgttaataatagttcagtt |
52247274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 12618463 - 12618416
Alignment:
| Q |
340 |
agtgtttgtgagtgttgtaaatctcaaagtatcgaatttgttttctat |
387 |
Q |
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||||| |||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
12618463 |
agtgtctgtgagtgttgtaaatctcatagtatcgagtttgatttctat |
12618416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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