View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_low_7 (Length: 435)
Name: NF2524_low_7
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 317 - 422
Target Start/End: Complemental strand, 31737668 - 31737563
Alignment:
| Q |
317 |
aagatttttattaccattgcggtagtctatcatttgaaagggatccaaagtccatggtttttacctcagacaaaaataagttaatcaatactagaccagt |
416 |
Q |
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| T |
31737668 |
aagatttttattaccattgcggtagtctatcatttgaaagtgatccaaagtccatggtttttacctcagacaaaaataagtgaatcaatactagaccagt |
31737569 |
T |
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| Q |
417 |
ccagaa |
422 |
Q |
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| T |
31737568 |
ccagaa |
31737563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 31737895 - 31737791
Alignment:
| Q |
19 |
gttgagccaacacattctacacaatagacttctcagctaattggttgaaaacaaatgttgaatgtaacagtggcataaaaggaaattattcgattaactt |
118 |
Q |
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| T |
31737895 |
gttgagccaccacattctacacaatagacttctcagctaattggttgaaaacaaatgttgaatgtaacaatggcataaaaggaaattattcgattaactt |
31737796 |
T |
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| Q |
119 |
tgggg |
123 |
Q |
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||||| |
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| T |
31737795 |
tgggg |
31737791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 31737791 - 31737700
Alignment:
| Q |
228 |
gaacacctaagtagggcattagaagcnnnnnnntgatcgattttgccctgatattacattagtttatagtaccaatacaaaattttattaag |
319 |
Q |
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| T |
31737791 |
gaacacctaagtagggcattagaagcaaaaaaatgatcgattttgccctgatattacattagtttatagtaccaatacaaaattttattaag |
31737700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 317 - 421
Target Start/End: Complemental strand, 31703285 - 31703182
Alignment:
| Q |
317 |
aagatttttattaccattgcggtagtctatcatttgaaagggatccaaagtccatggtttttacctcagacaaaaataagttaatcaatactagaccagt |
416 |
Q |
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| T |
31703285 |
aagatttttattaccgtcacgatagtctatcattggaaagtgatccaaagtccatagtttttacctcggacaaaaataagttaatcaatactaga-cagt |
31703187 |
T |
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| Q |
417 |
ccaga |
421 |
Q |
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||||| |
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| T |
31703186 |
ccaga |
31703182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 31707631 - 31707591
Alignment:
| Q |
18 |
agttgagccaacacattctacacaatagacttctcagctaa |
58 |
Q |
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| T |
31707631 |
agttgagccaccacattctacacaatagacttctcagctaa |
31707591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 31703580 - 31703498
Alignment:
| Q |
147 |
atcgaggtatgaacctatcgaaagaggatagaaactgagcgatccaagagcaagatgcgattgcatatgggctaagatggagaa |
230 |
Q |
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| T |
31703580 |
atcgaggtatggaccaatcgaaagaagagagaaaccgagtgatccaagagcaagacacgatcacatat-ggctaagatggagaa |
31703498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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