View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2525_high_1 (Length: 790)
Name: NF2525_high_1
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 241 - 557
Target Start/End: Original strand, 37936933 - 37937250
Alignment:
| Q |
241 |
gtaagctatgtattttggttgtatgtttgtgtctgttaaaaaa-taagcataataagttctgataatagctttgggagattcttctagacagaccacgac |
339 |
Q |
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| T |
37936933 |
gtaagctatgtattttggttgtatgtttgtgtctgttaaaaaaataagcataataagttctgataatagctttgggagattcttctagacagaccacgac |
37937032 |
T |
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| Q |
340 |
aattgagnnnnnnntgattatttataattgacagaatacaaaagctgattttatatagtgatgctaactaaactaacaaatcataactaaattgtaaata |
439 |
Q |
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| T |
37937033 |
aattgataaaaaaatgattatttataattgacagaatacaaaagctgattttatatagtgatgctaactaaactaacaaatcataactaaattgtaatta |
37937132 |
T |
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| Q |
440 |
aaagcaaccaacttgcaattatctagaactaacttcaacttattttaagacttcaactatatagaactaacttcaacagttcaactaattccagctagca |
539 |
Q |
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| T |
37937133 |
aaagcaaccaacttgcaattatctagaactaacttcaacttattttaagacttcaactatatagaactaacttcaacagttcaactaattctagctagca |
37937232 |
T |
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| Q |
540 |
cttcaattagagtaaaca |
557 |
Q |
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| T |
37937233 |
cttcaattagagtaaaca |
37937250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 603 - 773
Target Start/End: Original strand, 37937245 - 37937415
Alignment:
| Q |
603 |
taaacatatcaaaatcgcaaatacacccccgttgtctcttttgtgtgtaattttatggactatatcgactaacggaaaaacacatctaatgactaaaatg |
702 |
Q |
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| T |
37937245 |
taaacatatcaaaatcgcaaatacacccccgttgtctcttttgtgtgtaattttatggactatatcgactaacggaaaaacacatctaatgactaaaatg |
37937344 |
T |
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| Q |
703 |
atcaacagaagacatattcgagaaccaaaatgaccgcctatggagacaccactgagtatgtgtcagtaatt |
773 |
Q |
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| T |
37937345 |
atcaacagaagacatattcgagaaccaaaatgaccgcctatggagacaccaccgagtatatgttagtaatt |
37937415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 37936805 - 37936937
Alignment:
| Q |
12 |
caaagggaagaaaatcataggcatacaaaaggtagaaagcatattgatacccacgatgcttcatattaagaaaaatattaaattgattaaaaatgattaa |
111 |
Q |
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| T |
37936805 |
caaagggaagaaaatcataggcatacaaaaggcagaaagcatatcgatacccacgatgcttcatattaagaaaaatattaaattgattaaaaatgattaa |
37936904 |
T |
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| Q |
112 |
ctacctactaacaaccactaactgacttgtaag |
144 |
Q |
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| T |
37936905 |
ctacctactaacaaccactaactgacttgtaag |
37936937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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