View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2525_high_14 (Length: 268)
Name: NF2525_high_14
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 35853729 - 35853468
Alignment:
| Q |
1 |
tgcacctgaatatcctgttcaggtgcaatttttgtgtctggtgttttcgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaaga |
100 |
Q |
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| T |
35853729 |
tgcacctgaatatcctgttcaggtgcaatttttgtgtctggtgtttccgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaaga |
35853630 |
T |
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| Q |
101 |
tgcaacctgacgctgaagggaaattatccatacactagctttcttgactgtgctgtcgaaacatttaagg-----caggaggacctttgaagttttacac |
195 |
Q |
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| T |
35853629 |
tgcaacctgacgctgaagggaaa-tatccatacactagctttcttgactgtgctgtcgaaacatttaaggcaggacaggaggacctttgaagttttacac |
35853531 |
T |
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| Q |
196 |
tggattccctatctattgtgccaggattactccgcaagtcatagtattattcttttgcctttg |
258 |
Q |
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| T |
35853530 |
tggattccctatctattgtgccaggattactccgcaagtcatagtattattcttttgcctttg |
35853468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 35748585 - 35748791
Alignment:
| Q |
16 |
tgttcaggtgcaatttttgtgtctggtgttttcgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctg |
115 |
Q |
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| T |
35748585 |
tgttcaggtgcaatttttgtatctattatttatgcagctgcttgcagtttaccagttgaatatgtgatgattcagattcagaatatgcaacctgatgctg |
35748684 |
T |
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| Q |
116 |
aagggaaattatccatacactagctttcttgactgtgctgtcgaaacatttaaggcaggaggacctttgaagttttacactggattccctatctattgtg |
215 |
Q |
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| T |
35748685 |
aagggaaa-tatccatacaccggctttcttgattgcgctgtcaaaacctacaaagcaggaggaattttgaaattttacactggattccctctctattgtg |
35748783 |
T |
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| Q |
216 |
ccaggatt |
223 |
Q |
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| T |
35748784 |
tcaggatt |
35748791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 49 - 223
Target Start/End: Complemental strand, 35858259 - 35858086
Alignment:
| Q |
49 |
gcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctgaagggaaattatccatacactagctttcttgac |
148 |
Q |
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||||||| ||| |||||||||||||||||||||| ||| ||||||| |||||||||||||| | ||||||||| ||||||||||| ||| | ||||| |
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| T |
35858259 |
gcagctgtttgctgtttaccatttgaatatgtgatgattgaaattaagaagatgcaacctgatgacaaagggaaat-atccatacactggctatgttgac |
35858161 |
T |
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| Q |
149 |
tgtgctgtcgaaacatttaaggcaggaggacctttgaagttttacactggattccctatctattgtgccaggatt |
223 |
Q |
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| T |
35858160 |
tgtgctgtcaaaactctcatagcaggaggacctttgaagttttacactggattctccgtctattgtgccaggatt |
35858086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 35729138 - 35729367
Alignment:
| Q |
18 |
ttcaggtgcaatttttgtgtctggtgttttcgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctgaa |
117 |
Q |
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||||||||||| | ||| ||||| |||||||||| ||||| ||||| |||||||| ||||||| | || ||| | |||||||||||||| |||||| |
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| T |
35729138 |
ttcaggtgcaagtagtgtatctggatttttcgcagcagcttgcagtttgccatttgattatgtgaagacacagattcagaagatgcaacctgatgctgaa |
35729237 |
T |
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| Q |
118 |
gggaaattatccatacactagctttcttgactgtgctgtcgaaacatttaaggcaggaggacctttgaagttttacactggattccctatctattgtgcc |
217 |
Q |
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| T |
35729238 |
ggaaaat-acccatacactggttctcttgactgtgccgtcaaaaccttcaaagcaggaggacccttcaaattttacactggattccctgtctactgtgtt |
35729336 |
T |
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| Q |
218 |
aggattactccgcaagtcatagtattattct |
248 |
Q |
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|||||| |||| || ||||| ||| |||||| |
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| T |
35729337 |
aggattgctccccacgtcatggtactattct |
35729367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 35759985 - 35759881
Alignment:
| Q |
119 |
ggaaattatccatacactagctttcttgactgtgctgtcgaaacatttaaggcaggaggacctttgaagttttacactggattccctatctattgtgcca |
218 |
Q |
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||||| ||||||||||| ||| |||||||||||||||| |||| || | ||||||||||| || || |||| ||||||||| || || |||||||| |
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| T |
35759985 |
ggaaaatatccatacaccggctatcttgactgtgctgtcaaaaccttccaagcaggaggaccattcaatttttttactggattctctctcatttgtgcca |
35759886 |
T |
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| Q |
219 |
ggatt |
223 |
Q |
| |
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|||| |
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| T |
35759885 |
agatt |
35759881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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