View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2525_high_19 (Length: 243)
Name: NF2525_high_19
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_high_19 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 1192369 - 1192591
Alignment:
| Q |
18 |
gaacccatatcactgaacttccgataagggagagtaatagagtctattgcttggactccatattatgcgtatgaaccacatgtatctacaaaatattgat |
117 |
Q |
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| T |
1192369 |
gaacccatatcactgaacttccgataagggagagtaatagagtctattgcttggacttcatattatgtgtatgaaccacatgtatctacaaaatattgat |
1192468 |
T |
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| Q |
118 |
gcatacagttagtgaaaaatttgtaatcttaaaatttataaaaattagtatagaaaagtttacttaccataacaacactcagcggagccgcaaagtgtaa |
217 |
Q |
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| T |
1192469 |
gcatacagttaatgaaaaatttgtaatattaaaatttataaaaattagtatagaaaagtttacttaccat---aacactcagcggagccgcaaagtgtaa |
1192565 |
T |
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| Q |
218 |
caccctatattttgactatcaatttt |
243 |
Q |
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| T |
1192566 |
caccctatattttgactatcaatttt |
1192591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 1315356 - 1315248
Alignment:
| Q |
84 |
gcgtatgaaccacatgtatctacaaaatattgatgcatacagttagtgaaaaatttgtaatctta-aaatttataaaaattagtatagaaaagtttactt |
182 |
Q |
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|||| |||||||||||||||| ||||||| |||| |||| | |||||| |||||||||||| ||| || ||||||||||||| ||||||||| || |||| |
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| T |
1315356 |
gcgtctgaaccacatgtatctgcaaaataatgatacataaaattagtggaaaatttgtaatattataattttataaaaattattatagaaaaattgactt |
1315257 |
T |
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| Q |
183 |
accataaca |
191 |
Q |
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| T |
1315256 |
accataaca |
1315248 |
T |
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