View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2525_high_24 (Length: 235)

Name: NF2525_high_24
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2525_high_24
NF2525_high_24
[»] chr5 (2 HSPs)
chr5 (41-221)||(22917996-22918176)
chr5 (1-33)||(22918193-22918225)
[»] chr3 (2 HSPs)
chr3 (41-221)||(43787225-43787405)
chr3 (70-211)||(36155551-36155699)
[»] chr1 (1 HSPs)
chr1 (70-185)||(47742112-47742234)
[»] chr6 (3 HSPs)
chr6 (70-185)||(2267334-2267455)
chr6 (143-175)||(26533525-26533557)
chr6 (143-175)||(26533638-26533670)
[»] chr8 (2 HSPs)
chr8 (70-185)||(18208165-18208288)
chr8 (70-185)||(16804817-16804939)
[»] chr7 (1 HSPs)
chr7 (143-175)||(33868397-33868429)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 22918176 - 22917996
Alignment:
Q  41 tttcacgatttttcctgactatcagattattgctatttcacgtgttacatctaggagtgggctgaaaatacttctaacagacgatgaaggggcttgcatc 140  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22918176 tttcatgatttttcctgactatcagattattgctatttcacgtgttacatctaggagtgggctgaaaatacttctaacagacgatgaaggggcttgcatc 22918077  T
Q  141 aatcaaatgttgtttacaaagaagttttccgcaatttatcatgaaatgtttctttatgtaacaattgtattttgatgaatt 221  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22918076 aattaaatgttgtttacaaagaagtcttccgcaatttatcatgaaatgtttctttatgtaacaattgtattttgatgaatt 22917996  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22918225 - 22918193
Alignment:
Q  1 tgagggaaaagtccactgactgatatcagcaat 33  Q
    |||||||||||||||||||||||||||| ||||    
T  22918225 tgagggaaaagtccactgactgatatcaacaat 22918193  T

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Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 43787405 - 43787225
Alignment:
Q  41 tttcacgatttttcctgactatcagattattgctatttcacgtgttacatctaggagtgggctgaaaatacttctaacagacgatgaaggggcttgcatc 140  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43787405 tttcatgatttttcctgactatcagattattgctatttcacatgttacatctaggagtgggctgaaaatacttctaagagacgatgaaggggcttgcatc 43787306  T
Q  141 aatcaaatgttgtttacaaagaagttttccgcaatttatcatgaaatgtttctttatgtaacaattgtattttgatgaatt 221  Q
    ||||||||||||||||||||||||| ||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  43787305 aatcaaatgttgtttacaaagaagtcttccgtaatttatcataaaatgtttttttatataacaattgtattttgatgaatt 43787225  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 36155551 - 36155699
Alignment:
Q  70 ttgctatttcacgtgttacatctaggagtgggctgaaaatacttctaacagacgatgaaggggcttgcatcaa-------tcaaatgttgtttacaaaga 162  Q
    |||||||||||||||| || |||||||||||||||||||||||||| |||||||| || || |||||||||||       || ||||| |||||||||||    
T  36155551 ttgctatttcacgtgtgacttctaggagtgggctgaaaatacttctgacagacgacgatggtgcttgcatcaacactacttcgaatgtcgtttacaaaga 36155650  T
Q  163 agttttccgcaatttatcatgaaatgtttctttatgtaacaattgtatt 211  Q
    ||||||||||||||||| ||||||||| |  ||||||  ||||||||||    
T  36155651 agttttccgcaatttattatgaaatgtattgttatgtcccaattgtatt 36155699  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 47742112 - 47742234
Alignment:
Q  70 ttgctatttcacgtgttacatctaggagtgggctgaaaatacttctaacagacgatgaaggggcttgcatcaa-------tcaaatgttgtttacaaaga 162  Q
    |||||||||||||||| || |||||||||||||||||||||||||| | |||||| || ||||||||||||||       |||||||| |||||||||||    
T  47742112 ttgctatttcacgtgtgacttctaggagtgggctgaaaatacttctgatagacgaagatggggcttgcatcaaaagtacttcaaatgtcgtttacaaaga 47742211  T
Q  163 agttttccgcaatttatcatgaa 185  Q
    |||||| ||||||||||||||||    
T  47742212 agtttttcgcaatttatcatgaa 47742234  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 2267455 - 2267334
Alignment:
Q  70 ttgctatttcacgtgttacatctaggagtgggctgaaaatacttctaacagacgatgaaggggcttgcatcaa-------tcaaatgttgtttacaaaga 162  Q
    |||||||||||||||| || |||||||||||||||||||||||||| ||||| || || |||| |||||||||       |||||||| |||||||||||    
T  2267455 ttgctatttcacgtgtgacttctaggagtgggctgaaaatacttctgacagaagacgatgggg-ttgcatcaacaatacttcaaatgtcgtttacaaaga 2267357  T
Q  163 agttttccgcaatttatcatgaa 185  Q
    |||||||||||||||||||||||    
T  2267356 agttttccgcaatttatcatgaa 2267334  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 26533525 - 26533557
Alignment:
Q  143 tcaaatgttgtttacaaagaagttttccgcaat 175  Q
    ||||||||||||||||||||| |||||||||||    
T  26533525 tcaaatgttgtttacaaagaaattttccgcaat 26533557  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 26533638 - 26533670
Alignment:
Q  143 tcaaatgttgtttacaaagaagttttccgcaat 175  Q
    ||||||||||||||||||||| |||||||||||    
T  26533638 tcaaatgttgtttacaaagaaattttccgcaat 26533670  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 18208165 - 18208288
Alignment:
Q  70 ttgctatttcacgtgttacatctaggagtgggctgaaaatacttctaacagacgatgaaggggcttgcatcaa-------tcaaatgttgtttacaaaga 162  Q
    |||||||||||||||| || ||||||||||||||||||||| |||| ||||| || || ||||||||||||||       |||||||| |||||||||||    
T  18208165 ttgctatttcacgtgtgacttctaggagtgggctgaaaatatttctgacagatgacgatggggcttgcatcaacaatacttcaaatgtcgtttacaaaga 18208264  T
Q  163 agttttccgcaa-tttatcatgaa 185  Q
    |||||| ||||| |||||||||||    
T  18208265 agtttttcgcaattttatcatgaa 18208288  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 16804817 - 16804939
Alignment:
Q  70 ttgctatttcacgtgttacatctaggagtgggctgaaaatacttctaacagacgatgaaggggcttgcatcaa-------tcaaatgttgtttacaaaga 162  Q
    |||||||||||| ||| || |||||||||||||||||||||||||| | |||||| || ||||||||||||||       ||||||||  | ||||||||    
T  16804817 ttgctatttcacatgtgacttctaggagtgggctgaaaatacttctgatagacgacgatggggcttgcatcaaaagtacttcaaatgtcatgtacaaaga 16804916  T
Q  163 agttttccgcaatttatcatgaa 185  Q
    |||||| ||||||||||||||||    
T  16804917 agtttttcgcaatttatcatgaa 16804939  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 33868397 - 33868429
Alignment:
Q  143 tcaaatgttgtttacaaagaagttttccgcaat 175  Q
    ||||||||||||||||||||| |||||||||||    
T  33868397 tcaaatgttgtttacaaagaaattttccgcaat 33868429  T

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