View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2525_high_27 (Length: 204)
Name: NF2525_high_27
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 35787159 - 35786975
Alignment:
| Q |
12 |
gcaaaggtaaaggtggacctgataacaacaaattcagataccgtggtgtaagacaacgtagttggggtaaatgggttgctgaaattcgtgaaccacgtaa |
111 |
Q |
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| T |
35787159 |
gcaaaggtaaaggtggacctgataacaacaaattcagataccgtggtgtaagacaacgtagttggggtaaatgggttgctgaaattcgtgaaccacgtaa |
35787060 |
T |
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| Q |
112 |
acgtactcgtaaatggcttggtactttttcaactgctgaagatgctgctaaagcttatgatcgtgctgctattattctctatggt |
196 |
Q |
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| T |
35787059 |
acgtactcgtaaatggcttggtactttttcaactgctgaagatgctgctaaagcttatgatcgtgctgctattattctctatggt |
35786975 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 25896674 - 25896641
Alignment:
| Q |
73 |
ttggggtaaatgggttgctgaaattcgtgaacca |
106 |
Q |
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| T |
25896674 |
ttggggtaaatgggttgctgagattcgtgaacca |
25896641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 52690554 - 52690586
Alignment:
| Q |
73 |
ttggggtaaatgggttgctgaaattcgtgaacc |
105 |
Q |
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| T |
52690554 |
ttggggtaaatgggttgctgaaatccgtgaacc |
52690586 |
T |
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