View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2525_high_3 (Length: 540)
Name: NF2525_high_3
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_high_3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 5 - 540
Target Start/End: Complemental strand, 7010570 - 7010035
Alignment:
| Q |
5 |
aaaggttggggcatatatcaaacttagtaggttgctggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctga |
104 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7010570 |
aaagggtggtgcatatatcaaacttagtaggttgctggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctga |
7010471 |
T |
|
| Q |
105 |
tgaatgattctgggtaagcagctttagcttcagcaagctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccacattgtccagta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7010470 |
tgaatgattctgggtaagcagctttagcttcagcaagctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccacattgtccagta |
7010371 |
T |
|
| Q |
205 |
acgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttctataaaacacaacaattcaaacaacaaattaacacatcaaccgta |
304 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7010370 |
acgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttctataaaacacaacaattcaaacaacaaattaacacatcaaccgta |
7010271 |
T |
|
| Q |
305 |
caaaattcatcgctcgtaacacaaaatcggattgtttgcagtcagaaattctccgcattcattgagccgacacatcatgtagttgttggatcctgatcaa |
404 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7010270 |
caaaattcatcgcttgtaacacaaaatcggattgtttgcagtcagaaattctccgcattcattgagccggcacatcatgtagttgttggatcctgatcaa |
7010171 |
T |
|
| Q |
405 |
attccaacgaccagagatgtactggctgagtgaatgagagggtttctgactacatgcaatccaaattctacaacatgctataaaaatagcatagactata |
504 |
Q |
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| T |
7010170 |
attccaacgaccaatgatgtaccggctgagtgaatgagaggattgccgactacatgcaatccaaattctgcaaaatgctataaaaatagcatagactata |
7010071 |
T |
|
| Q |
505 |
tatttactgactatgtcacgtggcataacgtggcat |
540 |
Q |
| |
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|||||||| ||||| | ||||||||| ||||||| |
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| T |
7010070 |
tatttactatatatgtaaagtggcataaagtggcat |
7010035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 5 - 508
Target Start/End: Complemental strand, 7007492 - 7006999
Alignment:
| Q |
5 |
aaaggttggggcatatatcaaacttagtaggttgctggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctga |
104 |
Q |
| |
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||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7007492 |
aaagggtggtgcaaatatcaaacttagtaggttgctggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctga |
7007393 |
T |
|
| Q |
105 |
tgaatgattctgggtaagcagctttagcttcagcaagctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccacattgtccagta |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
7007392 |
tgaatgattctgggtaagcagctttagcttcagcaagctccttcaacacttgagaagaatcggtggctccgaacaaaggcaacttccacattgtccagta |
7007293 |
T |
|
| Q |
205 |
acgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttctataaaacacaacaattcaaacaacaaattaacacatcaaccgta |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || |
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| T |
7007292 |
acgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttctatataacacaa----------aacaaattaacacatcaacccta |
7007203 |
T |
|
| Q |
305 |
caaaattcatcgctcgtaacacaaaatcggattgtttgcagtcagaaattctccgcattcattgagccgacacatcatgtagttgttggatcctgatcaa |
404 |
Q |
| |
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|||| |||||| |||| |||||||| ||||||| | || |||||||||||||||||||||| ||| || ||||||||| ||||||||||||| ||||| |
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| T |
7007202 |
caaacttcatcactcgaaacacaaattcggattatctgaagtcagaaattctccgcattcacggagtcggcacatcatgcagttgttggatccatatcaa |
7007103 |
T |
|
| Q |
405 |
attccaacgaccagagatgtactggctgagtgaatgagagggtttctgactacatgcaatccaaattctacaacatgctataaaaatagcatagactata |
504 |
Q |
| |
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||||||||||||| ||||||| | |||||||||||||| || | |||| || ||||||||| ||| |||| | || ||||||||| |||||||||| |
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| T |
7007102 |
attccaacgaccaatgatgtaccgatcgagtgaatgagaggattaccgacttcaggcaatccaagttccacaaaaagcaataaaaatatgatagactata |
7007003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 9e-59; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 1358791 - 1358572
Alignment:
| Q |
41 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
140 |
Q |
| |
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|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
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| T |
1358791 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1358692 |
T |
|
| Q |
141 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctc |
240 |
Q |
| |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1358691 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctc |
1358592 |
T |
|
| Q |
241 |
acggtagacaaatcctttct |
260 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
1358591 |
acggtacacaaatcctttct |
1358572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 1374343 - 1374124
Alignment:
| Q |
41 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
140 |
Q |
| |
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|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
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| T |
1374343 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1374244 |
T |
|
| Q |
141 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctc |
240 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1374243 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctc |
1374144 |
T |
|
| Q |
241 |
acggtagacaaatcctttct |
260 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
1374143 |
acggtacacaaatcctttct |
1374124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 1394890 - 1394671
Alignment:
| Q |
41 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
140 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
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| T |
1394890 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaactttgtcgaatccgatgatacggacaaaggcattagggtaagcatcaacaacttcatcaa |
1394791 |
T |
|
| Q |
141 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctc |
240 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1394790 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctc |
1394691 |
T |
|
| Q |
241 |
acggtagacaaatcctttct |
260 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
1394690 |
acggtacacaaatcctttct |
1394671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 1350885 - 1350666
Alignment:
| Q |
41 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
140 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
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| T |
1350885 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1350786 |
T |
|
| Q |
141 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctc |
240 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
1350785 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctc |
1350686 |
T |
|
| Q |
241 |
acggtagacaaatcctttct |
260 |
Q |
| |
|
|||||| ||||||||||||| |
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| T |
1350685 |
acggtacacaaatcctttct |
1350666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 1384539 - 1384320
Alignment:
| Q |
41 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
140 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
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| T |
1384539 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1384440 |
T |
|
| Q |
141 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctc |
240 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
1384439 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctc |
1384340 |
T |
|
| Q |
241 |
acggtagacaaatcctttct |
260 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
1384339 |
acggtacacaaatcctttct |
1384320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 1390644 - 1390425
Alignment:
| Q |
41 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
140 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
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|
| T |
1390644 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1390545 |
T |
|
| Q |
141 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctc |
240 |
Q |
| |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
1390544 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctc |
1390445 |
T |
|
| Q |
241 |
acggtagacaaatcctttct |
260 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
1390444 |
acggtacacaaatcctttct |
1390425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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