View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2525_high_5 (Length: 363)
Name: NF2525_high_5
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 35951145 - 35951477
Alignment:
| Q |
16 |
aatatactaataaatttatttgaataagaatcgctatacttatggtcttaatataattaattaagcctactcttttgtttcacgtttatagcaagcaaaa |
115 |
Q |
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| T |
35951145 |
aatatactaataaatttatttgaataagaatcactatacttatggtcttaatataattaattaagcctacttttttgtttcacgtttatagcaagcaaaa |
35951244 |
T |
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| Q |
116 |
ttgattctggagttgtaaatttgatgttgacatgtttaattgttcttgaatacaaatgattttatcttcagaattgattcttaaatctaatttgaagcta |
215 |
Q |
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| T |
35951245 |
ttgattctggagctgtaaaattgatgttgacatgtttaattgttcttgaatacaaatgattttatcttcagaattgattcctaaatctaatttgaagcta |
35951344 |
T |
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| Q |
216 |
g-tttgtagattttgagtctaaaatgtgatttttacactggattttttgtcaagctcaataaacctatccaaacataaattaatttattcaactaagttt |
314 |
Q |
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| T |
35951345 |
gttttgtagattttgagtctaaaatgtgacttttacactggattttttgtcaagctcaataaacgtatccaaacataaattaatttattcaactaagttt |
35951444 |
T |
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| Q |
315 |
taaagtaaaatgaattgtttaaaatcaattttt |
347 |
Q |
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| T |
35951445 |
taaagtaaaacgaattatttaaaatcaattttt |
35951477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 2778550 - 2778510
Alignment:
| Q |
112 |
aaaattgattctggagttgtaaatttgatgttgacatgttt |
152 |
Q |
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| T |
2778550 |
aaaattgattctgaagatgtaaaattgatgttgacatgttt |
2778510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 50550516 - 50550592
Alignment:
| Q |
114 |
aattgattctggagttgtaaatttgatgttgacatgtttaattgttcttgaatacaaatgattttatcttcagaatt |
190 |
Q |
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|||||||| |||| |||| | ||||| |||||||||||||||||| |||| || || ||||| | ||||||||||| |
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| T |
50550516 |
aattgattttggatgtgtagagttgattttgacatgtttaattgttgttgattagaattgattctgtcttcagaatt |
50550592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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