View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2525_low_11 (Length: 355)
Name: NF2525_low_11
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 35853785 - 35854125
Alignment:
| Q |
1 |
gcatcagacaaagttcaa-gagacaaattgcaagagcgctaatgaaacaaacacatacnnnnnnngctgaaagactcagttaatacaagattggatcatt |
99 |
Q |
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| T |
35853785 |
gcatcagacaaagttcaaagagacaaattgcaagagcgctaatgaaacaaacacatacaaaaaaagctgaaagactcagttaatacaagattggatcatt |
35853884 |
T |
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| Q |
100 |
gaactccaaaagcaagggaggataaattaagccaaattgagccatgaagttaagaatgatttcttattcagtggaacacttctgtttgaactaggcttgg |
199 |
Q |
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| T |
35853885 |
gaactccaaaagcaagggaggataaattaagccaaattgagccatgaagttaagaatgatttcttattcagtggaacacttctgtttgaactaggcttgg |
35853984 |
T |
|
| Q |
200 |
gatggatggctcaactcattcaaccctacccataatggtatttatttgaactagtatg--tttctgtcaaaaaacttttgatcgaagagttcaagcaatt |
297 |
Q |
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| T |
35853985 |
gatggatggctcaactcattcaaccctacccataatggtatttatttgaactagtatgtttttctgtcaaaaaacttttgatcgaagagttcaagcaatt |
35854084 |
T |
|
| Q |
298 |
ttggctttaaagcatttttcaaatagcaaataaccataaac |
338 |
Q |
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| T |
35854085 |
ttggcttcaaagcatttttcaaatagcaaataaccataaac |
35854125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 81 - 330
Target Start/End: Original strand, 35858437 - 35858688
Alignment:
| Q |
81 |
aatacaagattggatcattgaactccaaaagcaagggaggataaattaagccaaattgagccatgaagttaagaatgatttcttattcagtggaacactt |
180 |
Q |
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| T |
35858437 |
aataaaagattggatcattgagctccacaagctacggaggataaattaagtaaaattgagtcatgaagttaagattgatttctaattcagttgaaaactt |
35858536 |
T |
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| Q |
181 |
ctgtttgaactaggcttgggatggatggctcaactcattcaaccctacccataatggtatttatttgaactagtatg--tttctgtcaaaaaacttttga |
278 |
Q |
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| T |
35858537 |
cagtttgaaataggcctggcatggatagttcaactcattcagcccaacagaaaatggtatttatttgaactagtatgtttttctgtgaaaaaactttcaa |
35858636 |
T |
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| Q |
279 |
tcgaagagttcaagcaattttggctttaaagcatttttcaaatagcaaataa |
330 |
Q |
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| T |
35858637 |
tcaaagagttcaagcaattttggattaaaagcgttttttaaatagcaaataa |
35858688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 35727805 - 35727703
Alignment:
| Q |
69 |
aaagactcagttaatacaagattggatcattgaactccaaaagcaagggaggataaattaagccaaattgagccatgaagttaagaatgatttcttattc |
168 |
Q |
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||||||||| || |||||||||||| ||||||| |||||||| ||||| ||||||||||||||||| ||||| | |||||| ||||||||||||| |
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| T |
35727805 |
aaagactcaatttatacaagattggctcattgagttccaaaagtcagggaacttaaattaagccaaattggaccatgcaattaagactgatttcttattc |
35727706 |
T |
|
| Q |
169 |
agt |
171 |
Q |
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||| |
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| T |
35727705 |
agt |
35727703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 35748516 - 35748467
Alignment:
| Q |
1 |
gcatcagacaaagttcaagagacaaattgcaagagcgctaatgaaacaaa |
50 |
Q |
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| T |
35748516 |
gcatcaaacaaagttcaagagacaaattgcaagagcactaatgaaacaaa |
35748467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 304
Target Start/End: Complemental strand, 35748330 - 35748233
Alignment:
| Q |
210 |
tcaactcattcaaccctacccataatggtatttatttgaactagta---tgtttctgtcaaaaaacttttgatcgaagagttcaagcaattttggctt |
304 |
Q |
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||||||||||||||| ||| || ||||||||| |||||||||||| | ||||| | ||||||||| | ||| || ||||| |||||||||||||| |
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| T |
35748330 |
tcaactcattcaaccttacacaaaatggtattggtttgaactagtatattttttctattaaaaaacttctaatcaaatagttctagcaattttggctt |
35748233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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