View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2525_low_16 (Length: 285)
Name: NF2525_low_16
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 50532172 - 50532425
Alignment:
| Q |
15 |
tatagatataatatatatgtaaaaattgtattaatccgatcggattcaaactccattgaaaaaacaatctaatctcgaccaaattgcatgttattttatt |
114 |
Q |
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| T |
50532172 |
tatagatataatatatatgtaaaaattgtattaatccgatcggattcaaactccattgaaaaaacaatctaatctcgaccaaattgcatgttattttatt |
50532271 |
T |
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| Q |
115 |
tttgaatcgaatgatattttacttaaaagtcgatacaaaccgtaacataaacacctatgttacatatgttttatggtggataacgtttcttataaatgga |
214 |
Q |
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| T |
50532272 |
tttgaatcgaatgatattttacttaaaagtcaatacaaaccgtaacataaacacctatgttacatatgttttatggtggataatgtttcttataaatgga |
50532371 |
T |
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| Q |
215 |
ttggtctaatcttcatcatgactttgtatctcctccatgcattataagattttt |
268 |
Q |
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| T |
50532372 |
tcggtctaatcttcatcatgactttgtatctcctccatgcattataagattttt |
50532425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 50534305 - 50534452
Alignment:
| Q |
21 |
tataatatatatgtaaaaattgtattaatccgatcggattcaaactccattg-aaaaaacaatctaatctcgaccaaattgcatgttattttatttttga |
119 |
Q |
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| T |
50534305 |
tataatatatatgtaaaaattgaattaatccaataggattcaaactccgttgtaaaaaacaatccaatctcaaccaaattgcatgatattttgttttaga |
50534404 |
T |
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| Q |
120 |
atcgaatgatattttacttaaaagtcgatacaaaccgtaacataaaca |
167 |
Q |
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| T |
50534405 |
atcgaatgatcatttatttgaaagtcgattcaaaccgtaacgtaaaca |
50534452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 50538535 - 50538676
Alignment:
| Q |
32 |
tgtaaaaattgtatt-aatccgatcggattcaaactccattgaaaaaacaatctaatctcgaccaaattgcatgttattttatttttgaatcgaatgata |
130 |
Q |
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| T |
50538535 |
tgtaaaaattgaatttaatccgatcggattcaaactccattgaaaaaacaatccaaacacaattaaaatacatccaaattaattttagaatcgaaagata |
50538634 |
T |
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| Q |
131 |
ttttacttaaaagtcgatacaaaccgtaacataaacacctat |
172 |
Q |
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| T |
50538635 |
tcttacttgaaagtcgattcaaaccgtaacacaaagacctat |
50538676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 44902788 - 44902735
Alignment:
| Q |
102 |
atgttattttatttttgaatcgaatgatattttacttaaaagtcgatacaaacc |
155 |
Q |
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| T |
44902788 |
atgtgattttaattttgaatcgaatgatattttgcttcaaaatcgatccaaacc |
44902735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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