View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2525_low_2 (Length: 636)
Name: NF2525_low_2
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 349 - 621
Target Start/End: Original strand, 1193035 - 1193307
Alignment:
| Q |
349 |
cataatccttctttaatgattccaaacaaaatctgatttttctccctttcatttatggaaaataattactttctcctctcttcctgcacgttttaatttt |
448 |
Q |
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| T |
1193035 |
cataatccttctttaatgattccaaacaaaatctgatttttctccctttcatttaaggaaaataattactttctcctctcttcctgcacgttttaatttt |
1193134 |
T |
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| Q |
449 |
acaaacattatcaaggaaagctcttgaatgttgttattccattaccatgcatctctggtcttcaaggaatcatcaacaacaattccacattgttgcctta |
548 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1193135 |
acaaacattatcaaggaaagctcttcaatgttgttattccattaccatgcatctctggtcttcaaggaatcatcaacaacaattccaccttgttgcctta |
1193234 |
T |
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| Q |
549 |
acctcatactataatttgaataggagaatggtcctttcccatttttggtacatgcacgtcccctctttccttt |
621 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1193235 |
accccatactataatttgaataggagaatggtcctttcccatttttggtacatgcacgtcccctcttttcttt |
1193307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 129 - 306
Target Start/End: Original strand, 1192737 - 1192910
Alignment:
| Q |
129 |
tagttagtggttagttatgtataccatgatttaagctatatcacatagtgactaactcctataaacttgattttccttatttttctctagaataacccat |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||| || |
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| T |
1192737 |
tagttagtggttagttatgtataccatgatttaagctatatcacacagtgactaacccctataaacttgattttccttatttttctttagaataacctat |
1192836 |
T |
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| Q |
229 |
tccttattttcttcggtatctatctatgatttccactaatcctttatttccatatctctctcccctggtatgtttcaa |
306 |
Q |
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| T |
1192837 |
tccttattttcttcgg----tatctatgatttccactactcctttatttccattactctctcccctggtatgtttcaa |
1192910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 1192638 - 1192740
Alignment:
| Q |
1 |
agcttattattattcattaagtaatactttcatatatgtcttttattgcacgttgatgccgtggtataatgagtaatacttggtgaaattgaacgggtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1192638 |
agcttattattattcattaagtaatactttcatatatgtcttttattgcacgttgatgccgtggtataatgagtaatacttggtcaaattgaacgggtct |
1192737 |
T |
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| Q |
101 |
agt |
103 |
Q |
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||| |
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| T |
1192738 |
agt |
1192740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 1192959 - 1193007
Alignment:
| Q |
306 |
aaacacatatatataacagtataacacgccatattccctctctcataat |
354 |
Q |
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| T |
1192959 |
aaacacatatatataacagtataacacgccatattccctctctcataat |
1193007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 480 - 621
Target Start/End: Complemental strand, 17543413 - 17543273
Alignment:
| Q |
480 |
tgttattccattaccatgcatctctggtcttcaaggaatcatcaacaacaattccacattgttgccttaacctcatactataatttgaataggagaatgg |
579 |
Q |
| |
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|||||||| || ||||| ||||| || ||||||| |||||||||||||||||| ||| || ||||||||||| ||||| || || ||||||| |||||| |
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| T |
17543413 |
tgttattcaataaccatacatctttg-tcttcaaagaatcatcaacaacaatttcactttattgccttaaccccataccatgatatgaatagaagaatga |
17543315 |
T |
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| Q |
580 |
tcctttcccatttttggtacatgcacgtcccctctttccttt |
621 |
Q |
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|||||| ||| ||| || |||| ||||| ||||||||||| |
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| T |
17543314 |
acctttctcatgttttgtgcatgaacgtcgtctctttccttt |
17543273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 349 - 434
Target Start/End: Complemental strand, 17543506 - 17543424
Alignment:
| Q |
349 |
cataatccttctttaatgattccaaacaaaatctgatttttctccctttcatttatggaaaataattactttctcctctcttcctg |
434 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||| || ||||||| |||||| ||||||||||| ||||||||||| |
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| T |
17543506 |
cataatccttctttaatgcttccaaacagaatctgattttt---tctctcatttaaggaaaagaattactttcttctctcttcctg |
17543424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 536
Target Start/End: Complemental strand, 12932394 - 12932322
Alignment:
| Q |
461 |
aaggaaagctcttgaatgttgttattccattaccatgcatctctggtcttcaaggaatcatcaacaacaattccac |
536 |
Q |
| |
|
|||||||||||||||||||| || | |||||||| ||||| ||||||||||||||| |||||||| |||||||| |
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| T |
12932394 |
aaggaaagctcttgaatgttttt---caattaccatacatctttggtcttcaaggaattatcaacaataattccac |
12932322 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 536
Target Start/End: Complemental strand, 32450942 - 32450871
Alignment:
| Q |
461 |
aaggaaagctcttgaatgttgttattccattaccatgcatctctggtcttcaaggaatcatcaacaacaattccac |
536 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||| ||||| ||||||||||||||| |||||||| |||||||| |
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| T |
32450942 |
aaggaaagctcttgaatgtt----ttcaatcaccatacatctttggtcttcaaggaattatcaacaataattccac |
32450871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 393
Target Start/End: Original strand, 52016309 - 52016353
Alignment:
| Q |
349 |
cataatccttctttaatgattccaaacaaaatctgatttttctcc |
393 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||||| |||| |
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| T |
52016309 |
cataatcattccttaatgattccaaacaaaatctgattttcctcc |
52016353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 523
Target Start/End: Original strand, 52016413 - 52016472
Alignment:
| Q |
461 |
aaggaaagctcttgaatgttgttattccattaccatgcatctctggtcttcaaggaatcatca |
523 |
Q |
| |
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|||||||||||||||||||| |||| |||||||| ||||| | |||||||||||||||||| |
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| T |
52016413 |
aaggaaagctcttgaatgtt---attcaattaccatacatctttagtcttcaaggaatcatca |
52016472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 18474829 - 18474795
Alignment:
| Q |
132 |
ttagtggttagttatgtataccatgatttaagcta |
166 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
18474829 |
ttagtggttagttatatataccatgatttaagcta |
18474795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 18474753 - 18474712
Alignment:
| Q |
189 |
ataaacttgattttccttatttttctctagaataacccattc |
230 |
Q |
| |
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||||||||| | ||||||||||||||||||||||||| |||| |
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| T |
18474753 |
ataaacttggtcttccttatttttctctagaataacctattc |
18474712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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