View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2525_low_27 (Length: 237)
Name: NF2525_low_27
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7010008 - 7009787
Alignment:
| Q |
1 |
tacaaaaaagcggcgtcatgaaaaatctgattggttgtatgtgtaaaaaagtttttcgccgacgttgtataatacttaaactctaaattaaaaaggaaga |
100 |
Q |
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| T |
7010008 |
tacaaaaaagtggtgtcatgaaaaatctgattggttgtatgtgtaaaaaagtttttcgccgacgatgtataatacttaaactctaatttaaaaaggaaga |
7009909 |
T |
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| Q |
101 |
aagaaaggattgcaatgtaaatagattaacctcaagctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgt |
200 |
Q |
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| T |
7009908 |
aagaaaggattgcaatgtaaatagattaacctcaagctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgt |
7009809 |
T |
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| Q |
201 |
tcctcagtgaggggtggaaggt |
222 |
Q |
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| T |
7009808 |
tcctcagtaagaggtggaaggt |
7009787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 7006890 - 7006693
Alignment:
| Q |
22 |
aaaatctgattggttgtatgtgtaaaaaagtttttcgccgacgttgtataatacttaaactctaaattaaaaaggaagaaagaaaggattgcaatgtaaa |
121 |
Q |
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| T |
7006890 |
aaaatctaattgattgtatgtgtaaaaaagtttttcaccgatagtgtatagtacttaaactctaaattaagaag-aagaaaaaaag--ttgcaatgtaaa |
7006794 |
T |
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| Q |
122 |
tagattaacctcaagctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtgaggggtggaagg |
221 |
Q |
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| T |
7006793 |
tagattaacctcaagctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgatcctcagtaaggggtggaagg |
7006694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 1373856 - 1373791
Alignment:
| Q |
137 |
ctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttc |
202 |
Q |
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| T |
1373856 |
ctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttc |
1373791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 1350559 - 1350498
Alignment:
| Q |
141 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttc |
202 |
Q |
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| T |
1350559 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttc |
1350498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 1358465 - 1358404
Alignment:
| Q |
141 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttc |
202 |
Q |
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| T |
1358465 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttggccaattgttc |
1358404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 1384213 - 1384152
Alignment:
| Q |
141 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttc |
202 |
Q |
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| T |
1384213 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttc |
1384152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 1390318 - 1390257
Alignment:
| Q |
141 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttc |
202 |
Q |
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| T |
1390318 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttc |
1390257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 1394564 - 1394503
Alignment:
| Q |
141 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttc |
202 |
Q |
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| T |
1394564 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttc |
1394503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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