View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2525_low_3 (Length: 626)
Name: NF2525_low_3
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 260 - 610
Target Start/End: Original strand, 30018250 - 30018600
Alignment:
| Q |
260 |
caactaatgaggttaacagcttaagagaagcttcaatattgcttcaatcagaactaaaagaagaaaagttgattctcaacaaccttaaagaaagtgaaga |
359 |
Q |
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| T |
30018250 |
caactaatgaggttaacagcttaagagaagcttcaatattgcttcaatcagaactaaaagaagaaaagttgattctcaacaaccttaaagaaagtgaaga |
30018349 |
T |
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| Q |
360 |
aaaagctgctgctaaagtaacaagtcttcaagttgaacttgagaaatcaaaatcagcaatagcttttcttcaaatgaaagagaatgaagcaaaagagatt |
459 |
Q |
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| T |
30018350 |
aaaagcttctgctaaagtcacaagtcttcaagttgaactggagaaatcaaaatcagcaatagcttttcttcaaatgaaagagaatgaagcaaaagagatt |
30018449 |
T |
|
| Q |
460 |
atggctgagttacctaagaaacttcaagcagcagcacaagaagctgatgaagctaaatcactagctcaaactgctaaagctcaacttcttgaagcacaag |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30018450 |
atggctgagttacctaagaaacttcaagcagcagcacaagaagctgatgaagctaaatcactagctcaaactgctaaagctcaacttcttgaagcacaag |
30018549 |
T |
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| Q |
560 |
aagaagctgaaaaagccaaagcaaacttagctacattggaaagtagattac |
610 |
Q |
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| T |
30018550 |
aagaagctgaaaaagccaaagcaaacttagctacattggaaagtagattac |
30018600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 30017999 - 30018184
Alignment:
| Q |
9 |
agcatagggcatcatcgatgaagaaactcaaaactataagcttgaacttgaacaatcagaaaaggagctagagacactaaatgaacaagttttatcagca |
108 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30017999 |
agcatcgggcgtcatcgatgaagaaactcaaaactataagcttgaacttgaacaatcagaaaaggagctagagacactaaatgaacaagttttatcagca |
30018098 |
T |
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| Q |
109 |
agagttctcaaatccaaattggaagcatcttcctctttgttgcttgatttgaaaaccgagttagcagcatatatggaatcaaaact |
194 |
Q |
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| T |
30018099 |
agagttctcaaatccaaattggaagcatcttcctctttgttgcttgatttgaaaaccgagttagcagcatatatggaatcaaaact |
30018184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 1217783 - 1217689
Alignment:
| Q |
260 |
caactaatgaggttaacagcttaagagaagcttcaatattgcttcaatcagaactaaaagaagaaaagttgattctcaacaaccttaaagaaagt |
354 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |
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| T |
1217783 |
caactaatgaggttaacagcttaagaggagcttcaatattgcttcaatcagaactagaagaagaaatgttaattctcaacaaccttaaagaaagt |
1217689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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