View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2525_low_6 (Length: 422)
Name: NF2525_low_6
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 76 - 404
Target Start/End: Complemental strand, 41795351 - 41795026
Alignment:
| Q |
76 |
ataaatattatcttttcaaccttttcttgtacttctttttcctctactgcagcactgtgttcatctgcgtcattagttctcatctcaacttctctctcca |
175 |
Q |
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| T |
41795351 |
ataaatattatcttttcaaccttttcttgtacttctttttcctctactgcagcattgtgttcatctgcttcattagttctcatctcaacttctctctcca |
41795252 |
T |
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| Q |
176 |
acaatggctcgttcacctcaacatcaagaacatgagaccgtgaacaaatttcttcttctttttcttcaatattggaaggtttatcatcatcatcatcact |
275 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41795251 |
acaatggctcattcacctcaacatcaagaacatgagaccgtgaacaaatttcttcttctttttcttcaatattggaaggtttatcatcatc---atcact |
41795155 |
T |
|
| Q |
276 |
agaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgctgttcttgtctatattgtgagtgtagagttga |
375 |
Q |
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| T |
41795154 |
agaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgttgttcttgtctatattgtgagtgtagagttga |
41795055 |
T |
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| Q |
376 |
gaaggaaaagtagagaaatataatttaaa |
404 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
41795054 |
gaaggaaaagtagagaaatataatttaaa |
41795026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 264 - 404
Target Start/End: Complemental strand, 41760314 - 41760174
Alignment:
| Q |
264 |
atcatcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgctgttcttgtctatattgtga |
363 |
Q |
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| T |
41760314 |
atcatcatcactagaagaggcagaaaaagatttagttaaaccaacaaaaacaaggagaccattacaaaggaggaacatgctattcttgtctatgttgtga |
41760215 |
T |
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| Q |
364 |
gtgtagagttgagaaggaaaagtagagaaatataatttaaa |
404 |
Q |
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| T |
41760214 |
gtgtagagttgaaaagggagagtagagaaatataatttaaa |
41760174 |
T |
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