View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2525_low_8 (Length: 403)
Name: NF2525_low_8
Description: NF2525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2525_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 173 - 387
Target Start/End: Original strand, 507658 - 507872
Alignment:
| Q |
173 |
agggataactagtgataacctacctgagatgagtatttgatcctagaatatcggtcaaaggaatatgaaatgcttctgaccaagataactgtttaatgca |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
507658 |
agggataactagtgataacctacctgagatgagtatttgatcctagaatatcggtcaaaggaatatgaaatgcttctgaccaagataactgtttaatgca |
507757 |
T |
|
| Q |
273 |
tgtagcagttggtgttccccaacggtaactaccagcagagaagttcaaaaacttatcctcttttgttttcttatcaaatggttccttgaacaccttcttc |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
507758 |
tgtagcagttggtgttccccaacggtaactaccagcagagaagttcaaaaacttatcctcttttgttttcttatcaaatggttccttgaacaccttcttc |
507857 |
T |
|
| Q |
373 |
tgctcacaccttaat |
387 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
507858 |
tgctcacaccttaat |
507872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 47994397 - 47994471
Alignment:
| Q |
13 |
aaaatcatgattgatcaagagtaatattacaactatatgatcagtgttgtatatgaaaaactatgaatacgtatt |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47994397 |
aaaatcatgattgatcaagagtaatattacaactatatgatcagtgttgtatatgaaaaactatgaatacgtatt |
47994471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 353
Target Start/End: Original strand, 16703985 - 16704109
Alignment:
| Q |
229 |
aaaggaatatgaaatgcttctgaccaagataactgtttaatgcatgtagcagttggtgttccccaacggtaactaccagcagagaagttcaaaaacttat |
328 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| || ||||| |||| ||||||||||||||||||||||||| ||| || | ||| ||||| | |
|
|
| T |
16703985 |
aaagggatatgaaatgcctctgaccaagataactgtccaacacatgtggcagaaggtgttccccaacggtaactaccagaagaaaattgcaagaacttgt |
16704084 |
T |
|
| Q |
329 |
cctcttttgttttcttatcaaatgg |
353 |
Q |
| |
|
||||||| || || ||||||||||| |
|
|
| T |
16704085 |
cctctttggtctttttatcaaatgg |
16704109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 353
Target Start/End: Original strand, 17678221 - 17678345
Alignment:
| Q |
229 |
aaaggaatatgaaatgcttctgaccaagataactgtttaatgcatgtagcagttggtgttccccaacggtaactaccagcagagaagttcaaaaacttat |
328 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| || ||||| |||| ||||||||||||||||||||||||| ||| || | ||| ||||| | |
|
|
| T |
17678221 |
aaagggatatgaaatgcctctgaccaagataactgtccaacacatgtggcagaaggtgttccccaacggtaactaccagaagaaaattgcaagaacttgt |
17678320 |
T |
|
| Q |
329 |
cctcttttgttttcttatcaaatgg |
353 |
Q |
| |
|
||||||| || || ||||||||||| |
|
|
| T |
17678321 |
cctctttggtctttttatcaaatgg |
17678345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University