View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2526_high_1 (Length: 247)
Name: NF2526_high_1
Description: NF2526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2526_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 55060447 - 55060672
Alignment:
| Q |
8 |
accggcgaaagcttcaacttcacaccaaaatctctaatcttctgtgatggctcaatgaaagttctaccaacatagtgtgacctaatcaaaccctgttgaa |
107 |
Q |
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| T |
55060447 |
accggcgaaagcttcaacttcacaccaaaatctctaatcttctgtgatggctcaatgaaagttctaccaacatagtgtggcctaatcaaaccctgttgaa |
55060546 |
T |
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| Q |
108 |
aaggaacaccaacttttgcagcataaccaagtgcagcaacaacaccacaatcaggaacaactataacaacatcacaatcaacagaactc-ttagtagcca |
206 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
55060547 |
aaggaacaccagcttttgcagcataaccaagtgcagcaacaacaccaaaatcaggaacaactataacaacatcacaatcaacaggactctttagtagcca |
55060646 |
T |
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| Q |
207 |
atatttcaccaaaccatgttcttgat |
232 |
Q |
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||||||||||||||||| |||||||| |
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| T |
55060647 |
atatttcaccaaaccatcttcttgat |
55060672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 27356635 - 27356828
Alignment:
| Q |
11 |
ggcgaaagcttcaacttcacaccaaaatctctaatcttctgtgatggctcaatgaaagttctaccaacatagtgtgacctaatcaaaccctgttgaaaag |
110 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || || |||||||||||||||||||| || || ||||||| |
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| T |
27356635 |
ggcgaaagcttcaacttcacaccaaaatccctaattttctgagatggctcaatgaaagtccttcctacatagtgtgacctaatcaacccttgctgaaaag |
27356734 |
T |
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| Q |
111 |
gaacaccaacttttgcagcataaccaagtgcagcaacaacaccacaatcaggaacaactataacaacatcacaatcaacagaactcttagtagc |
204 |
Q |
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|||||||| |||| |||||||||||||| ||||| ||||||||| ||||||||||| |||| ||||||||||||||||||| ||||| |||||| |
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| T |
27356735 |
gaacaccagctttcgcagcataaccaagagcagccacaacaccagaatcaggaacagctatcacaacatcacaatcaacaggactctcagtagc |
27356828 |
T |
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