View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2526_high_3 (Length: 251)
Name: NF2526_high_3
Description: NF2526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2526_high_3 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 14131893 - 14132135
Alignment:
| Q |
9 |
atcatagggccaatattgctgtatttgtctacaaatctgcaacacttgtgtcttgacaaaaaatttcgtattttcatgtgtctggaataattcaatactg |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14131893 |
atcatggggccaatattgctgtatttgtctacaaatctgcaacacttgtgtcttgccaaaaaatttcgtattttcatgtgtctggaataattcaatactg |
14131992 |
T |
|
| Q |
109 |
taatagtatctgattacatttgtcttatttatttgtattcacatagaaaatttcgtccttaaggaatctgtatccaattattaacaagatttgaagtgtt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14131993 |
taatagtatctgattacatttgtcttatttatttgtattcacatagaaaatttcgtccttaaggaatatgtatccaattattaacaagatttgaagtgtt |
14132092 |
T |
|
| Q |
209 |
atggtgacataaatttaaggctcaacatgtatttattgttcct |
251 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14132093 |
atggtgacataaatttaaggttcaacatgtatttattgttcct |
14132135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University