View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2526_low_2 (Length: 350)
Name: NF2526_low_2
Description: NF2526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2526_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 76 - 345
Target Start/End: Original strand, 17722622 - 17722891
Alignment:
| Q |
76 |
ttcgacatccctttttctgggatattatgggtttattgtttaggttgttgattttgtggatttaaaagttatcctttatttgttgttagatctgggttca |
175 |
Q |
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| T |
17722622 |
ttcgtcatccctttttctgggattttatgggtttattgtttaggttgttgattttgtggatttaaaagttatcatttatttgttgttagatctgggttca |
17722721 |
T |
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| Q |
176 |
attcttacctccttgattttttgtgctggtaaaattcatttcattggtttgagcttgtcttgttttattgcttaaattcatttcattgaataacaataaa |
275 |
Q |
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| T |
17722722 |
attcttacctccttgattttttgtgctggtaaaattcatttcattggtttgagcttgtcttgttttatggcttaaattcatttcattgaataacaataaa |
17722821 |
T |
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| Q |
276 |
gatataaaatgcagagaaaagaacgggaacaaggttttgctgctaaaattctttatgggtctgtggtgct |
345 |
Q |
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| T |
17722822 |
tatataaaatgcagagaaaagaacgagaacaagattttgttgctaaaattctttatgagtttgtgttgct |
17722891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 38816932 - 38816865
Alignment:
| Q |
7 |
caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatatt |
74 |
Q |
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| T |
38816932 |
caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatatt |
38816865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 15942098 - 15942147
Alignment:
| Q |
235 |
ttgttttattgcttaaattcatttcattgaataacaataaagatataaaa |
284 |
Q |
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| T |
15942098 |
ttgttctatttcttaaattcatttcattgaagaacaatagagataaaaaa |
15942147 |
T |
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