View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2526_low_4 (Length: 256)

Name: NF2526_low_4
Description: NF2526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2526_low_4
NF2526_low_4
[»] chr1 (12 HSPs)
chr1 (48-234)||(16584864-16585050)
chr1 (102-234)||(25785805-25785937)
chr1 (56-234)||(8083994-8084173)
chr1 (72-234)||(1161433-1161594)
chr1 (103-234)||(11619973-11620104)
chr1 (50-234)||(18461120-18461295)
chr1 (48-206)||(42009997-42010155)
chr1 (56-206)||(512961-513111)
chr1 (47-140)||(32678514-32678607)
chr1 (56-138)||(8414674-8414756)
chr1 (93-225)||(11911629-11911762)
chr1 (71-138)||(27320560-27320627)
[»] chr8 (12 HSPs)
chr8 (1-234)||(17722420-17722642)
chr8 (48-234)||(35948827-35949013)
chr8 (48-234)||(7956340-7956516)
chr8 (48-234)||(44223327-44223503)
chr8 (48-185)||(9505015-9505153)
chr8 (101-206)||(3767684-3767789)
chr8 (48-206)||(16570890-16571047)
chr8 (48-185)||(32321799-32321936)
chr8 (56-206)||(34760834-34760975)
chr8 (149-223)||(9040513-9040587)
chr8 (48-100)||(9040427-9040479)
chr8 (97-133)||(8266063-8266099)
[»] chr4 (7 HSPs)
chr4 (48-227)||(23107918-23108097)
chr4 (51-234)||(4413456-4413640)
chr4 (47-234)||(24466315-24466502)
chr4 (70-234)||(28319290-28319454)
chr4 (56-185)||(53393204-53393333)
chr4 (51-185)||(8606181-8606315)
chr4 (48-137)||(39839064-39839153)
[»] chr5 (8 HSPs)
chr5 (47-224)||(16746550-16746727)
chr5 (48-220)||(31895896-31896068)
chr5 (51-234)||(19947711-19947894)
chr5 (107-234)||(16746421-16746548)
chr5 (70-185)||(1498243-1498358)
chr5 (56-199)||(29126091-29126234)
chr5 (58-96)||(41092125-41092163)
chr5 (79-139)||(30126223-30126283)
[»] scaffold0879 (1 HSPs)
scaffold0879 (47-234)||(580-767)
[»] chr7 (13 HSPs)
chr7 (47-234)||(39695086-39695268)
chr7 (48-218)||(7352385-7352555)
chr7 (109-234)||(46993309-46993434)
chr7 (101-227)||(7994998-7995124)
chr7 (48-206)||(48070614-48070772)
chr7 (48-185)||(3996991-3997128)
chr7 (103-234)||(11727328-11727449)
chr7 (80-184)||(46265353-46265457)
chr7 (80-220)||(2922986-2923125)
chr7 (56-139)||(12013026-12013109)
chr7 (48-199)||(27226938-27227089)
chr7 (56-112)||(12471855-12471911)
chr7 (60-112)||(35738239-35738291)
[»] chr2 (11 HSPs)
chr2 (48-234)||(31111413-31111599)
chr2 (50-234)||(13852269-13852453)
chr2 (101-234)||(4638207-4638340)
chr2 (48-206)||(29109190-29109348)
chr2 (60-207)||(3919882-3920029)
chr2 (48-167)||(12893980-12894099)
chr2 (167-234)||(36009278-36009345)
chr2 (101-232)||(38607020-38607150)
chr2 (93-179)||(37630375-37630461)
chr2 (56-185)||(5526225-5526353)
chr2 (47-134)||(30906942-30907029)
[»] chr3 (12 HSPs)
chr3 (48-227)||(46655514-46655694)
chr3 (51-199)||(44471020-44471168)
chr3 (47-223)||(11503337-11503513)
chr3 (47-199)||(30554574-30554726)
chr3 (56-145)||(46892612-46892701)
chr3 (84-185)||(27524053-27524154)
chr3 (103-199)||(779533-779629)
chr3 (56-144)||(23307117-23307205)
chr3 (50-113)||(12937849-12937912)
chr3 (48-206)||(26757593-26757751)
chr3 (93-179)||(44285605-44285691)
chr3 (48-148)||(23659401-23659501)
[»] scaffold0565 (1 HSPs)
scaffold0565 (108-234)||(1844-1970)
[»] chr6 (7 HSPs)
chr6 (51-184)||(7176529-7176662)
chr6 (78-185)||(23301441-23301548)
chr6 (48-138)||(11971456-11971546)
chr6 (78-206)||(23300455-23300583)
chr6 (103-205)||(7551423-7551525)
chr6 (58-179)||(9826747-9826868)
chr6 (108-185)||(23585913-23585990)
[»] scaffold0070 (1 HSPs)
scaffold0070 (48-138)||(33729-33819)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 16585050 - 16584864
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  16585050 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaaacgaaaaaatatccaaccttgtttggttcggtttgaaaccga 16584951  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  16584950 tccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaatctgatgat 16584864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 25785805 - 25785937
Alignment:
Q  102 caaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcg 201  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||    
T  25785805 caaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaaccaatcgaaaccgatatagtttggtttggttcatggtttttcatttcg 25785904  T
Q  202 agatctgtgaaaccgatgaaccaatctgatgat 234  Q
    ||||| |||||||||||||||||||| ||||||    
T  25785905 agatccgtgaaaccgatgaaccaatccgatgat 25785937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 8083994 - 8084173
Alignment:
Q  56 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaaccaatccgaac 154  Q
    ||||||||||| | | |||||| |||| |||||||||||||  || ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  8083994 taagtggttcggacataaccaacgaaatcgaaagtccaaactaaatcaaaccgaaaaaaatatccgaccttgtttggtttggtttgaaaccaatccgaac 8084093  T
Q  155 taatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
     ||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||| |||||| ||||| ||||||    
T  8084094 caatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaatccgatgat 8084173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 1161594 - 1161433
Alignment:
Q  72 aaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatcta 171  Q
    |||||| |||| | |||||  ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| | | ||||||||||||||||    
T  1161594 aaccaacgaaatcaaaagtttaaaccgaaccaaaccgaaaaa-tatccgaccttatttggttcggtttgaaaccaatccaagccaatcgaaaccgatcta 1161496  T
Q  172 gtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    ||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||| ||||||    
T  1161495 gtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaatccgatgat 1161433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 103 - 234
Target Start/End: Original strand, 11619973 - 11620104
Alignment:
Q  103 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 202  Q
    ||||| ||||||||||| | |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |||| ||    
T  11619973 aaaccaaaaaaatatccgatcttgtttggttcagtttgaaaccgatccaaactaatcgaaaccgatctagtttggtttggttcatggtttttcattttga 11620072  T
Q  203 gatctgtgaaaccgatgaaccaatctgatgat 234  Q
    ||||||||||||||||||||||||| ||||||    
T  11620073 gatctgtgaaaccgatgaaccaatccgatgat 11620104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 234
Target Start/End: Original strand, 18461120 - 18461295
Alignment:
Q  50 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatc 149  Q
    ||||| |||||||||| || |||||||| |||||| |||||||||||| |||||||         ||||| ||||||||| ||||||||| ||| | |||    
T  18461120 ggggtgtaagtggttcaaacaaaaccaacgaaaccaaaagtccaaaccaaaccaaa---------tatccgaccttgtttagttcggtttcaaatcgatc 18461210  T
Q  150 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
     | || |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  18461211 tggaccaatcaaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaaccaatccgatgat 18461295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 42010155 - 42009997
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| |||| |||||| || ||||||| |||||||| ||||||||| | |||||||||||||||||||| || |||||||||||||||||||||| |    
T  42010155 taggggtgtaagcggttcggattaaaccaacgaaaccgatagtccaaactggaccaaaccgaaaaaatatccgacattgtttggttcggtttgaaaccga 42010056  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 206  Q
    ||| ||| ||| |||||||||||||||| |||||  ||||| ||||| |||| ||||||    
T  42010055 tccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcattttgagatc 42009997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 206
Target Start/End: Original strand, 512961 - 513111
Alignment:
Q  56 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 155  Q
    ||||||||||| | |||||  |||||| | |||  ||||| ||||||||||||||||| ||||||| ||||||||||||||||  ||||||| ||||||     
T  512961 taagtggttcggacaaaactgatgaaatcaaaaacccaaatcgaaccaaaccgaaaaagtatccaatcttgtttggttcggttcaaaaccaaaccgaacc 513060  T
Q  156 aatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 206  Q
    || | |||||||||||||||| || | ||| | |||||| |||| ||||||    
T  513061 aacctaaaccgatctagtttgattcgattcttaatttttaattttgagatc 513111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 32678607 - 32678514
Alignment:
Q  47 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttg 140  Q
    |||| ||| ||||||||||||| |||||| |||||| ||||| | |||||||||| || |||||||||||||| ||||||||||||| ||||||    
T  32678607 atagaggtgtaagtggttcgaacaaaaccgatgaaatcgaaaattcaaaccgaactaagccgaaaaaatatccgaccttgtttggtttggtttg 32678514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 8414756 - 8414674
Alignment:
Q  56 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 138  Q
    ||||||||||| | |||||| ||||||| |||| ||||||| |||| ||||||||||| ||||| ||||||||||||| ||||    
T  8414756 taagtggttcggacaaaaccgatgaaactgaaaatccaaactgaacaaaaccgaaaaagtatccgaccttgtttggtttggtt 8414674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 11911629 - 11911762
Alignment:
Q  93 aaaccgaaccaaaccgaaaaaa-tatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatt 191  Q
    ||||| ||||||  |||||||| ||||| ||||||||||||||||||  ||||| | |||||| || | |||||||||||||||| ||| |||| || ||    
T  11911629 aaaccaaaccaattcgaaaaaagtatccgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaaccgatctagtttgatttagttcttggtt 11911728  T
Q  192 ttttatttcgagatctgtgaaaccgatgaaccaa 225  Q
    ||| |||| || ||| |   ||||||||||||||    
T  11911729 tttaattttgaaatccgatgaaccgatgaaccaa 11911762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 27320627 - 27320560
Alignment:
Q  71 aaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 138  Q
    ||||| |||||||||||| || |||| ||| |||| | ||||| ||||| ||||||||||||||||||    
T  27320627 aaaccgatgaaaccgaaaatctaaactgaatcaaatcaaaaaagtatccgaccttgtttggttcggtt 27320560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 17722642 - 17722420
Alignment:
Q  1 cccagaaaaagggatgacgaaaattgacgnnnnnnntcaacgagagataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaa 100  Q
    ||||||||||||||||||||||||||| |       |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |    
T  17722642 cccagaaaaagggatgacgaaaattgaagaaaaaa-tcaacgagagataggggtgtaaatggttcggataaaaccaatgaaaccgaaagtccaaaccgga 17722544  T
Q  101 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 200  Q
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17722543 ----------aaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatttttcatttc 17722454  T
Q  201 gagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    ||||||||||||||||||||||||||| ||||||    
T  17722453 gagatctgtgaaaccgatgaaccaatccgatgat 17722420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 35948827 - 35949013
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| |||||| |||| | |||||||| |||| ||||||||||||  |||||||| | ||||||||||| || |||||||||||||||||||||| |    
T  35948827 taggggtgtaagtgtttcggacaaaaccaacgaaaacgaaagtccaaattgaaccaaaacaaaaaaatatccgactttgtttggttcggtttgaaaccga 35948926  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    ||||||  | || ||| ||||||||||||||||| |||||| ||||| |||||||||||  ||||||||||||||||||| ||||||    
T  35948927 tccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaatccgatgat 35949013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 7956516 - 7956340
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||          ||||||| | |||||| || ||| ||||||||||| |    
T  7956516 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa----------aaaatattcgaccttgctttgtttggtttgaaaccga 7956427  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    | ||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||| ||||||    
T  7956426 ttcgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatccgatgat 7956340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 44223503 - 44223327
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||          |||||||   | |||||||||||| |||| ||||| |    
T  44223503 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa----------aaaatatatgatcttgtttggttcagtttaaaaccga 44223414  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    || |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  44223413 tctgaaccaatcgaaaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgat 44223327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 9505015 - 9505153
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccg-aaaaaatatccaaccttgtttggttcggtttgaaacca 146  Q
    ||||||| ||||||||| | |||||||| |||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||| ||  ||| |     
T  9505015 taggggtgtaagtggtttggataaaaccgatgaaaccgaaaatccaaacctaaccaaaacgaaaaaaatatccaaccttgtttggttcgattcaaaatcg 9505114  T
Q  147 atccgaactaatcgaaaccgatctagtttggtttggttc 185  Q
    | |||||| || | |||||||| |||||||||| |||||    
T  9505115 aaccgaaccaaccaaaaccgatatagtttggttcggttc 9505153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 3767789 - 3767684
Alignment:
Q  101 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 200  Q
    ||||||||||||| ||||| ||||||||| ||||||||  ||||| | |||||| |||| |||||||||||||||||||||||||  | ||||||||||     
T  3767789 ccaaaccgaaaaagtatccgaccttgtttagttcggttcaaaaccgaaccgaaccaatctaaaccgatctagtttggtttggttctcggttttttatttt 3767690  T
Q  201 gagatc 206  Q
    ||||||    
T  3767689 gagatc 3767684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 16571047 - 16570890
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||| ||||| | | |||||| |||||| | ||| | |||||||||||||||| ||||||||||||||||||||||||| ||||  ||||| |    
T  16571047 taggggtgtaattggtttggacaaaaccgatgaaatcaaaaattcaaaccgaaccaaacc-aaaaaatatccaaccttgtttggtttggttcaaaaccga 16570949  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 206  Q
     || ||| || | ||||||||||| ||||||| |||||  ||||||| |||| ||||||    
T  16570948 accaaaccaacctaaaccgatctaatttggttaggttctcgatttttaattttgagatc 16570890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 32321799 - 32321936
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    |||||||  |||||||||| |||||||  ||||||||||||  | ||||| || |||||||||||| ||| | ||||||||||||||||||| ||| |||    
T  32321799 taggggtgcaagtggttcggataaaactgatgaaaccgaaaacctaaaccaaatcaaaccgaaaaagtattcgaccttgtttggttcggtttaaaaacaa 32321898  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttc 185  Q
     |||||  ||   ||||||||||| ||||||| |||||    
T  32321899 accgaatcaacataaaccgatctaatttggttcggttc 32321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 206
Target Start/End: Complemental strand, 34760975 - 34760834
Alignment:
Q  56 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 155  Q
    |||| |||||||| |||||| |||||||||||| ||||||||||         ||||| ||||  | ||||||||||||||||  ||| | | ||||||     
T  34760975 taagcggttcgaacaaaaccgatgaaaccgaaaatccaaaccga---------aaaaagtatctgatcttgtttggttcggttcaaaatcgaaccgaacc 34760885  T
Q  156 aatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 206  Q
    || | ||||||||||||||||||||||||| || ||||| |||| ||||||    
T  34760884 aacctaaaccgatctagtttggtttggttcttggtttttgattttgagatc 34760834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 9040513 - 9040587
Alignment:
Q  149 ccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacc 223  Q
    |||||| |||| |||||||||| ||||||||||||||  | ||||| |||| |||||||  ||||||||||||||    
T  9040513 ccgaaccaatctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaacc 9040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 9040427 - 9040479
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaa 100  Q
    ||||||| |||| |||||| |||||||| |||||| |||||||||||||||||    
T  9040427 taggggtataagcggttcggataaaaccgatgaaatcgaaagtccaaaccgaa 9040479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 8266063 - 8266099
Alignment:
Q  97 cgaaccaaaccgaaaaaatatccaaccttgtttggtt 133  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  8266063 cgaaccaaaccgaaaaagtatccaaccttatttggtt 8266099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 23108097 - 23107918
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||||| |    
T  23108097 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaacaggaaaaatatccgaccttgtttggtttggtttgaaaccga 23107998  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatc 227  Q
    ||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  23107997 tccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaatc 23107918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 51 - 234
Target Start/End: Original strand, 4413456 - 4413640
Alignment:
Q  51 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaaccaatc 149  Q
    |||| ||||||||||| |||||||||| |||||| ||||| ||||| |||| | |||||||| ||||||| | ||||||||||||||||| ||||| |||    
T  4413456 gggtgtaagtggttcggataaaaccaacgaaaccaaaagttcaaactgaactagaccgaaaaaaatatccgatcttgtttggttcggtttaaaaccgatc 4413555  T
Q  150 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||    
T  4413556 cgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgataaaccaatccgatgat 4413640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 47 - 234
Target Start/End: Complemental strand, 24466502 - 24466315
Alignment:
Q  47 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 146  Q
    |||||||| ||||||||||  |  ||||||| |||||||| ||||||||||  ||||||| |||||||||||  | |||||||||||||||||||||||     
T  24466502 ataggggtgtaagtggttcagactaaaccaacgaaaccgatagtccaaaccagaccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccg 24466403  T
Q  147 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    |||||||| ||| ||||||||||||||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||| ||||||    
T  24466402 atccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgat 24466315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 234
Target Start/End: Complemental strand, 28319454 - 28319290
Alignment:
Q  70 aaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 169  Q
    |||||||| |||| |||||||| ||| ||||||||||||||||||||||  || ||||||||||||||||||||||  ||||||| |||| ||| ||||     
T  28319454 aaaaccaacgaaatcgaaagtctaaatcgaaccaaaccgaaaaaatatctgacattgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatt 28319355  T
Q  170 tagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    || |||||||||||||||| ||||| ||||||||||  ||||| | |||||| ||||||||||||    
T  28319354 taatttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatcaatctgatgat 28319290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 53393333 - 53393204
Alignment:
Q  56 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 155  Q
    ||||||||||| | |||||| |||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||  | ||||||     
T  53393333 taagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaccaaaccaaaaaagtatccgaccttgtttggttcggtttaaaactgaaccgaacc 53393234  T
Q  156 aatcgaaaccgatctagtttggtttggttc 185  Q
    || | ||||||||||||||||||| |||||    
T  53393233 aacctaaaccgatctagtttggttcggttc 53393204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 8606315 - 8606181
Alignment:
Q  51 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 150  Q
    |||| ||||||||||| | |||||| | ||||| || |||| |||   ||||||||||||||| |||||||| |||||||| ||||||  |||||||  |    
T  8606315 gggtgtaagtggttcggacaaaaccgacgaaactgatagtcaaaattaaaccaaaccgaaaaagtatccaactttgtttggctcggttcaaaaccaaatc 8606216  T
Q  151 gaactaatcgaaaccgatctagtttggtttggttc 185  Q
    |||| |||| |||||||||| | |||||| |||||    
T  8606215 gaaccaatctaaaccgatcttggttggttcggttc 8606181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 39839153 - 39839064
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggt 137  Q
    ||||||| ||||||||||| |  ||||| |||||||||||| |||||||| || ||||| |||||| |||   |||||||||||||||||    
T  39839153 taggggtgtaagtggttcggacgaaaccgatgaaaccgaaaatccaaaccaaatcaaactgaaaaagtatttgaccttgtttggttcggt 39839064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 16746727 - 16746550
Alignment:
Q  47 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 146  Q
    |||||| | ||||||||||| | |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  16746727 atagggatgtaagtggttcggacaaaaccaacgaaaccgaaagtctaaaccgaaccaaatcgaaaaaatatccaaccttgtttggttcggtttgaaaccg 16746628  T
Q  147 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacca 224  Q
    |||| ||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||| ||||||||||    
T  16746627 atccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 31895896 - 31896068
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||||||||||| | ||||||||  ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  31895896 taggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccga 31895995  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatga 220  Q
    || |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  31895996 tctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaaccgatga 31896068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 51 - 234
Target Start/End: Original strand, 19947711 - 19947894
Alignment:
Q  51 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 150  Q
    |||| ||||||||||| | |||| ||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||    
T  19947711 gggtgtaagtggttcggacaaaatcaacgaatccgaaagtccaaaccgaaccaaaccgaaaaaatatccgacattgtttggttcagtttgaaaccgatcc 19947810  T
Q  151 gaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
     ||| ||||||| | |||||| |||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||    
T  19947811 aaaccaatcgaatctgatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaaccaatccgatgat 19947894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 107 - 234
Target Start/End: Complemental strand, 16746548 - 16746421
Alignment:
Q  107 cgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 206  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  16746548 cgaaaaaatatccaaccttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatc 16746449  T
Q  207 tgtgaaaccgatgaaccaatctgatgat 234  Q
     |||||| ||||||||||||| ||||||    
T  16746448 cgtgaaatcgatgaaccaatccgatgat 16746421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 1498358 - 1498243
Alignment:
Q  70 aaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 169  Q
    |||||| |||||||||||| ||||||||||| ||||| || ||||||||| ||||||||||||||||||  ||||| | | |||| || | ||||||||     
T  1498358 aaaaccgatgaaaccgaaaatccaaaccgaatcaaactgagaaaatatccgaccttgtttggttcggttcaaaaccgaactgaaccaacctaaaccgatg 1498259  T
Q  170 tagtttggtttggttc 185  Q
    |||||  |||||||||    
T  1498258 tagttaagtttggttc 1498243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 29126091 - 29126234
Alignment:
Q  56 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 155  Q
    ||||||||||| | |||||||| ||||  || | |  ||||||||||||||||||||| ||||| |  |||||||| || |||||||||| | |  |||     
T  29126091 taagtggttcggacaaaaccaacgaaatggagaatttaaaccgaaccaaaccgaaaaagtatccgattttgtttgggtcagtttgaaaccgaactaaacc 29126190  T
Q  156 aatcgaaaccgatctagtttggtttggttcatgattttttattt 199  Q
    || | |||||| |||||||| |||||||||   |||||||||||    
T  29126191 aacctaaaccggtctagtttagtttggttctcaattttttattt 29126234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 41092163 - 41092125
Alignment:
Q  58 agtggttcgaataaaaccaatgaaaccgaaagtccaaac 96  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  41092163 agtggttcgaacaaaaccaatgaaaccgaaagtcaaaac 41092125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 30126283 - 30126223
Alignment:
Q  79 gaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggttt 139  Q
    |||| ||||| ||||||||||| |||||  ||||||||| | |||||||||||||| ||||    
T  30126283 gaaatcgaaactccaaaccgaatcaaacaaaaaaaatattcgaccttgtttggttctgttt 30126223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 47 - 234
Target Start/End: Complemental strand, 767 - 580
Alignment:
Q  47 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 146  Q
    |||||||| ||||||||||  |  ||||||| |||||||| ||||||||||  ||||||| |||||||||||  | |||||||||||||||||||||||     
T  767 ataggggtgtaagtggttcagactaaaccaacgaaaccgatagtccaaaccagaccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccg 668  T
Q  147 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    |||||||| ||| ||||||||||||||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||| ||||||    
T  667 atccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgat 580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 47 - 234
Target Start/End: Original strand, 39695086 - 39695268
Alignment:
Q  47 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 146  Q
    |||||||| |||||||||||   |||||||| |||||||||||||||| ||     |||||||| | |||||| |||||||||||||||||||||||||     
T  39695086 ataggggtgtaagtggttcgggcaaaaccaacgaaaccgaaagtccaaccc-----aaaccgaagagatatccgaccttgtttggttcggtttgaaaccg 39695180  T
Q  147 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    ||| |||| ||||||||| ||| ||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||    
T  39695181 atctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaatctgatgat 39695268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 7352555 - 7352385
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||| ||||||  | |||||||| ||||||||||||||||| | |||| |||||||||||||||| || || ||||||| ||||||||||| |    
T  7352555 taggggtgtaattggttcagacaaaaccaacgaaaccgaaagtccaaatcaaaccgaaccgaaaaaatatccgactttatttggtttggtttgaaaccga 7352456  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgat 218  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  7352455 tccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat 7352385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 46993309 - 46993434
Alignment:
Q  109 aaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctg 208  Q
    ||||||||| | ||||||||||| |||||||||||   |||||||  ||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |    
T  46993309 aaaaaatattcgaccttgtttgggtcggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 46993408  T
Q  209 tgaaaccgatgaaccaatctgatgat 234  Q
    |||||||||| |||||||| ||||||    
T  46993409 tgaaaccgattaaccaatccgatgat 46993434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 7994998 - 7995124
Alignment:
Q  101 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 200  Q
    |||||| ||||||||||   ||||||||||||||||||  ||| | |||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||     
T  7994998 ccaaactgaaaaaatatttgaccttgtttggttcggttgaaaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcatttt 7995097  T
Q  201 gagatctgtgaaaccgatgaaccaatc 227  Q
    |||||  ||||||||||||||||||||    
T  7995098 gagattcgtgaaaccgatgaaccaatc 7995124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 48070614 - 48070772
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||||||||||| | |||| | || ||||||||| || ||||||||| ||||| ||||||||||| |||||||||| || ||||  ||||| |    
T  48070614 taggggtgtaagtggttcggacaaaatcgatcaaaccgaaaatctaaaccgaactaaaccaaaaaaatatccgaccttgtttgatttggttcaaaaccga 48070713  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 206  Q
     ||||||||| | |||||||||||||||| || |||||  | ||||| |||| ||||||    
T  48070714 accgaactaacctaaaccgatctagtttgattcggttctcggtttttaattttgagatc 48070772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 3997128 - 3996991
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||  |||| || |||||||||| ||||  ||||| |    
T  3997128 taggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccgtaccaaaccgaagaagaatccgactttgtttggtttggttcaaaaccga 3997029  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttc 185  Q
     || ||| |||| ||||| | || |||||||| |||||    
T  3997028 acctaaccaatctaaaccaaccttgtttggttcggttc 3996991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 234
Target Start/End: Complemental strand, 11727449 - 11727328
Alignment:
Q  103 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 202  Q
    |||||||||||||||   |||||||||||||||||||||||||||||           ||||||||||||||||||||||||| || ||||| |||||||    
T  11727449 aaaccgaaaaaatatatgaccttgtttggttcggtttgaaaccaatca----------aaaccgatctagtttggtttggttcgtggtttttcatttcga 11727360  T
Q  203 gatctgtgaaaccgatgaaccaatctgatgat 234  Q
    |||| || |||||||| |||||||| ||||||    
T  11727359 gatccgtaaaaccgataaaccaatccgatgat 11727328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 46265457 - 46265353
Alignment:
Q  80 aaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 179  Q
    |||||||||||||||||||||||||||| ||||  ||||| |||||||  |||||||||  ||||| | |||||  |||| |||||||||| ||||||||    
T  46265457 aaaccgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtcgggttcggttcaaaaccgaaccgaatcaatctaaaccgatcttgtttggtt 46265358  T
Q  180 tggtt 184  Q
    |||||    
T  46265357 tggtt 46265353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 220
Target Start/End: Original strand, 2922986 - 2923125
Alignment:
Q  80 aaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 179  Q
    ||||||||||||||||| |||||||||| ||||  ||| ||||||||| ||||||||||  ||||| | |||||| |||| | ||||| || ||||| ||    
T  2922986 aaaccgaaagtccaaac-gaaccaaaccaaaaatgtattcaaccttgtatggttcggttcaaaaccgaaccgaaccaatctacaccgaccttgtttgatt 2923084  T
Q  180 tggttcatgattttttatttcgagatctgtgaaaccgatga 220  Q
     ||||| |||||||| |||| ||||||   |||||||||||    
T  2923085 cggttcttgatttttcattttgagatccaagaaaccgatga 2923125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 12013109 - 12013026
Alignment:
Q  56 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggttt 139  Q
    ||||||||| |||||||||| |||||| ||||| |  |||  ||||| |||||||||| ||||| ||||| |||||||||||||    
T  12013109 taagtggtttgaataaaaccgatgaaatcgaaaatttaaattgaaccgaaccgaaaaagtatccgaccttatttggttcggttt 12013026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 27227089 - 27226938
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||||| ||||| | |||||| |||||| | ||||||||||||||| |||||  ||||  ||||| | ||||| ||||| || |  || || |    
T  27227089 taggggtgtaagttgttcggacaaaaccgatgaaatcaaaagtccaaaccgaaacaaacttaaaaggtatcccatcttgtctggtttggatcaaagccga 27226990  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 199  Q
     |||||| |||| ||||||| || |||||||| ||||| || ||||| ||||    
T  27226989 accgaaccaatctaaaccgaccttgtttggttcggttcttggtttttaattt 27226938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 12471911 - 12471855
Alignment:
Q  56 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa 112  Q
    ||||||||||| |||||||| ||||||  |||| |||||||||||| |||| |||||    
T  12471911 taagtggttcggataaaaccgatgaaattgaaaatccaaaccgaacaaaactgaaaa 12471855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 35738291 - 35738239
Alignment:
Q  60 tggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa 112  Q
    ||||||| |||||| | | ||||| |||||||||||||||||| |||||||||    
T  35738291 tggttcggataaaatcgacgaaacggaaagtccaaaccgaaccgaaccgaaaa 35738239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 31111413 - 31111599
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| |||||||||   | |||| ||| |||||||||| ||||||  |||||||||||||||||||||| ||||||||||||||||||||||||  |    
T  31111413 taggggtgtaagtggtttagacaaaatcaacgaaaccgaaaatccaaattgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaactga 31111512  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    || |||| ||| ||||||||||||||||||||||||||||| ||||| |||| ||||||  |||||||||| |||||||||| ||||    
T  31111513 tctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaaccaatctggtgat 31111599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 13852453 - 13852269
Alignment:
Q  50 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatc 149  Q
    ||||| ||||| ||||| | |||||||| |||| ||||||||||||  ||| |||| | ||||||||||  || ||||||| |||||||||||||| |||    
T  13852453 ggggtgtaagtagttcggacaaaaccaacgaaatcgaaagtccaaattgaatcaaatcaaaaaaatatctgactttgtttgattcggtttgaaaccgatc 13852354  T
Q  150 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    | ||| |||| |||||||||||||||||||||||||||  ||||| |||| |||||| |||||||||||||||||||||| ||||    
T  13852353 caaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaatctgttgat 13852269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 234
Target Start/End: Original strand, 4638207 - 4638340
Alignment:
Q  101 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 200  Q
    ||||||||||||||||||| |||||||| |||||||||||||| | |||||||| |||| | || ||| ||||||||||||||||||| ||||| ||||     
T  4638207 ccaaaccgaaaaaatatccgaccttgttcggttcggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcatttt 4638306  T
Q  201 gagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    |||||| |||||||||||||||||||| ||||||    
T  4638307 gagatccgtgaaaccgatgaaccaatccgatgat 4638340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 29109348 - 29109190
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||||||||||| | |||||  ||||||| |||| ||||||||||||||||| |||||| ||||| |||||||||||||| |||  ||||| |    
T  29109348 taggggtgtaagtggttcggacaaaactgatgaaactgaaaatccaaaccgaaccaaactgaaaaattatccgaccttgtttggttcagttcaaaaccga 29109249  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 206  Q
     |||||  || | ||||| |||||||||||||||||||  | ||||| |||| ||||||    
T  29109248 accgaagcaacctaaaccaatctagtttggtttggttctcggtttttaattttgagatc 29109190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 207
Target Start/End: Complemental strand, 3920029 - 3919882
Alignment:
Q  60 tggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatc 159  Q
    ||||| ||| ||||||||||||||| ||| | ||||| ||| ||||||||||||  || | || |||||||||| ||||  ||||| | |||||| || |    
T  3920029 tggttggaacaaaaccaatgaaacctaaaattcaaactgaatcaaaccgaaaaagcattcgactttgtttggtttggttcaaaaccgaaccgaaccaaac 3919930  T
Q  160 gaaaccgatctagtttggtttggttcatgattttttatttcgagatct 207  Q
     ||||||||||||||||||||||||| | |||||| |||| |||||||    
T  3919929 taaaccgatctagtttggtttggttcttaatttttaattttgagatct 3919882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 12894099 - 12893980
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| | ||||||||  | |||||||| |||| | ||||||||||| |||||||||| ||||  ||||| ||||||||||||||||||  |||| ||    
T  12894099 taggggtgtgagtggttcagacaaaaccaacgaaatcaaaagtccaaactgaaccaaaccaaaaatgtatccgaccttgtttggttcggttcaaaacaaa 12894000  T
Q  148 tccgaactaatcgaaaccga 167  Q
     |||||| |||| |||||||    
T  12893999 accgaaccaatctaaaccga 12893980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 36009278 - 36009345
Alignment:
Q  167 atctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatctgatgat 234  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||||||||| ||||| ||||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgat 36009345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 232
Target Start/End: Original strand, 38607020 - 38607150
Alignment:
Q  101 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 200  Q
    |||||||||||| |||||| |||||||||| |||| ||  ||||| | |||||| |||| |||| || || |||||||| ||||| || ||||| ||||     
T  38607020 ccaaaccgaaaatatatccgaccttgtttg-ttcgattcaaaaccgaaccgaaccaatctaaactgaccttgtttggttcggttcttggtttttcatttt 38607118  T
Q  201 gagatctgtgaaaccgatgaaccaatctgatg 232  Q
    ||||||  | ||||||||||||| || |||||    
T  38607119 gagatccataaaaccgatgaaccgatttgatg 38607150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 37630375 - 37630461
Alignment:
Q  93 aaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 179  Q
    ||||||||||||||||||||| |||| ||||||| |||||| ||||  ||| | |||| ||| || | |||| ||||||||||||||    
T  37630375 aaaccgaaccaaaccgaaaaagtatcgaaccttgcttggtttggttcaaaatcgatccaaaccaacctaaactgatctagtttggtt 37630461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 5526225 - 5526353
Alignment:
Q  56 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 155  Q
    |||||||| || | |||||||| |||| ||||| ||||||   ||||||||||||||  ||||| ||||||||| ||||||||  ||||  |  |||||     
T  5526225 taagtggtccggacaaaaccaaagaaatcgaaaatccaaattaaaccaaaccgaaaacgtatccgaccttgttttgttcggttcaaaactga-acgaacc 5526323  T
Q  156 aatcgaaaccgatctagtttggtttggttc 185  Q
    || | ||||||||||||||||||| |||||    
T  5526324 aacctaaaccgatctagtttggttcggttc 5526353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 30907029 - 30906942
Alignment:
Q  47 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttc 134  Q
    |||||||| ||||||||| | | |||| | |||||||||||| |||| || |||||||||| ||||| | | | ||||||||||||||    
T  30907029 ataggggtgtaagtggtttggacaaaatcgatgaaaccgaaaatccagactgaaccaaaccaaaaaagttttcgaccttgtttggttc 30906942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 227
Target Start/End: Original strand, 46655514 - 46655694
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaacca 146  Q
    |||||||  |||||||||| ||||| |||| |||| ||||| ||| |||| ||||||||| |||| ||||||| |||||  ||||||||||||||||||     
T  46655514 taggggtgcaagtggttcggataaatccaacgaaatcgaaaatccgaaccaaaccaaaccaaaaaaaatatccgaccttacttggttcggtttgaaaccg 46655613  T
Q  147 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatc 227  Q
    |||||||| |||| ||||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  46655614 atccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatc 46655694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 44471020 - 44471168
Alignment:
Q  51 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 150  Q
    |||| ||||||||||| | |||||| |||||| ||||| |||||||||||||||||||||||  ||||| ||||||||| ||||||||  ||||| | ||    
T  44471020 gggtgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaaccgaacc 44471119  T
Q  151 gaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 199  Q
     ||| |||| ||||||||||||||||||| ||||| || ||||| ||||    
T  44471120 aaaccaatctaaaccgatctagtttggttcggttcttggtttttaattt 44471168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 11503513 - 11503337
Alignment:
Q  47 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 146  Q
    |||||||| |||| ||||   |||||||| ||||||| ||||||||||||||||||||||| ||||  ||||| ||||||| ||||  ||||  |||||     
T  11503513 ataggggtgtaagcggttaagataaaaccgatgaaactgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtctggtaaggttcaaaaccg 11503414  T
Q  147 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacc 223  Q
    | |||||| |||||||||||||||  |||||||||||||  ||||||| |||| ||||||   ||||||||| ||||    
T  11503413 aaccgaaccaatcgaaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaacc 11503337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 199
Target Start/End: Complemental strand, 30554726 - 30554574
Alignment:
Q  47 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 146  Q
    |||||||| ||| ||||||||| |||| | |||||||||||| |||||| ||| | ||||||||||| ||||| ||||||||| ||||||||  ||| |     
T  30554726 ataggggtgtaaatggttcgaacaaaatcgatgaaaccgaaaatccaaatcgagctaaaccgaaaaagtatccgaccttgtttagttcggttcaaaatcg 30554627  T
Q  147 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 199  Q
    | |||||| |||| ||||||||||||||||||| |||||  ||||||| ||||    
T  30554626 aaccgaaccaatctaaaccgatctagtttggttcggttctcgatttttaattt 30554574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 46892612 - 46892701
Alignment:
Q  56 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacc 145  Q
    |||||||||||   |||||| |||||||  ||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  46892612 taagtggttcgggcaaaaccgatgaaacaaaaaattcaaaccgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttaaaacc 46892701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 27524053 - 27524154
Alignment:
Q  84 cgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggt 183  Q
    |||||||||||||  ||||||||||||||  ||| | |||||||||||||||| |  ||||||| || ||| |||| ||| ||| || |||||||| |||    
T  27524053 cgaaagtccaaactaaaccaaaccgaaaaggtattcgaccttgtttggttcggatcaaaaccaaaccaaaccaatctaaatcgaccttgtttggttcggt 27524152  T
Q  184 tc 185  Q
    ||    
T  27524153 tc 27524154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 779629 - 779533
Alignment:
Q  103 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 199  Q
    ||||||||||| ||||||||||||||| ||||||||  ||||  |  ||||| || | ||||| ||||||||||||| ||||| || ||||| ||||    
T  779629 aaaccgaaaaagtatccaaccttgtttagttcggttcaaaacagaatcgaaccaacctaaaccaatctagtttggttcggttcttggtttttaattt 779533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 23307205 - 23307117
Alignment:
Q  56 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaac 144  Q
    ||||||||||||| |||| | ||||||  ||||||| ||||| |||||||| |||| | ||| ||||||||  ||||||||||| ||||    
T  23307205 taagtggttcgaacaaaatcgatgaaattgaaagtctaaaccaaaccaaactgaaatagtattcaaccttgaatggttcggtttaaaac 23307117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 12937912 - 12937849
Alignment:
Q  50 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaa 113  Q
    ||||| |||||| |||| |||||| | |||||||||||| |||||||||||| ||| |||||||    
T  12937912 ggggtgtaagtgattcggataaaatcgatgaaaccgaaaatccaaaccgaactaaatcgaaaaa 12937849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 26757593 - 26757751
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||||||||| | | ||||||||||||| ||||| |||||| | ||| ||| ||||||| ||| | || ||||||||||  |||| ||||  |    
T  26757593 taggggtgtaagtggtttggacaaaaccaatgaaatcgaaaatccaaatcaaacaaaatcgaaaaagtattcgacgttgtttggtttagtttaaaactga 26757692  T
Q  148 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 206  Q
     |||||| || | ||| |||| ||| |||||| ||||| ||  |||| |||| ||||||    
T  26757693 accgaaccaacctaaatcgatatagattggttcggttcttggattttaattttgagatc 26757751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 44285605 - 44285691
Alignment:
Q  93 aaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 179  Q
    ||||||||  |||||||||||||||   ||||||||||||||||||  ||||| | |||||| || | ||| |||| ||||||||||    
T  44285605 aaaccgaattaaaccgaaaaaatatatgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaatcgatttagtttggtt 44285691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 23659401 - 23659501
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 147  Q
    ||||||| ||||||||||  | |||| | |||||||||||| | |||||||  | ||| ||||||| |||| ||  |||||||||||||||  |||||||    
T  23659401 taggggtataagtggttcagacaaaatcgatgaaaccgaaaattcaaaccgttctaaatcgaaaaagtatctaattttgtttggttcggttcaaaaccaa 23659500  T
Q  148 t 148  Q
    |    
T  23659501 t 23659501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 234
Target Start/End: Complemental strand, 1970 - 1844
Alignment:
Q  108 gaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatct 207  Q
    |||||||||||| ||||||||||||||||||||||| | ||| |||| |||| |||| |||||| |||||||||||||||| ||||| ||||||||||      
T  1970 gaaaaaatatccgaccttgtttggttcggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagattc 1871  T
Q  208 gtgaaaccgatgaaccaatctgatgat 234  Q
    |||||||||||||||||||| ||||||    
T  1870 gtgaaaccgatgaaccaatccgatgat 1844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 7176662 - 7176529
Alignment:
Q  51 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 150  Q
    |||| |||||| |||| | |||||| ||||||||||||   | ||||||||||| |||||||| ||||||||||||||||||| ||||  ||| | | ||    
T  7176662 gggtgtaagtgtttcggacaaaaccgatgaaaccgaaaactctaaccgaaccaacccgaaaaagtatccaaccttgtttggtttggttcaaaatcgaacc 7176563  T
Q  151 gaactaatcgaaaccgatctagtttggtttggtt 184  Q
    |||| || | ||||||||||||||||||| ||||    
T  7176562 gaaccaacctaaaccgatctagtttggttcggtt 7176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 23301441 - 23301548
Alignment:
Q  78 tgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttgg 177  Q
    ||||||||||| | ||||| ||||||||||||||||  || | ||||||||||||||||||  ||||| | |||||| || | |||| ||||||||||||    
T  23301441 tgaaaccgaaaattcaaactgaaccaaaccgaaaaataattcgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaactgatctagtttgg 23301540  T
Q  178 tttggttc 185  Q
    || |||||    
T  23301541 ttcggttc 23301548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 11971456 - 11971546
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 138  Q
    ||||||| |||||||||   ||||||||||||||| |||||  | ||||||||| ||||||||||  ||||| | ||||||||||||||||    
T  11971456 taggggtgtaagtggtttagataaaaccaatgaaatcgaaaacctaaaccgaactaaaccgaaaatgtatccgatcttgtttggttcggtt 11971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 23300455 - 23300583
Alignment:
Q  78 tgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttgg 177  Q
    ||||||||||| | ||||||||||||||||||||||  |  | ||||||||||||||||||  ||||  | |||||| || | |||| |||||||||| |    
T  23300455 tgaaaccgaaaattcaaaccgaaccaaaccgaaaaagaaatcgaccttgtttggttcggttcaaaactgaaccgaaccaacctaaactgatctagtttag 23300554  T
Q  178 tttggttcatgattttttatttcgagatc 206  Q
    || |||||  | ||||| |||| ||||||    
T  23300555 ttcggttctcggtttttaattttgagatc 23300583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 7551525 - 7551423
Alignment:
Q  103 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 202  Q
    ||||||||||  |||||||| ||||||||||||| |  ||||||| |||||| |||| ||||||   | |||||| | ||||| |||||||| |||||||    
T  7551525 aaaccgaaaaggtatccaacattgtttggttcggatcaaaaccaaaccgaaccaatctaaaccggctttgtttgggtcggttcttgatttttcatttcga 7551426  T
Q  203 gat 205  Q
    |||    
T  7551425 gat 7551423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 9826747 - 9826868
Alignment:
Q  58 agtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaacc-ttgtttggttcggtttgaaaccaatccgaacta 156  Q
    ||||||||| | |||||| | |||||| ||| | ||||| ||||||||||| |||| ||||| ||| || ||||||||||||  ||||| | |||||| |    
T  9826747 agtggttcggagaaaaccgaagaaaccaaaaattcaaactgaaccaaaccg-aaaagtatccgacctttatttggttcggttgaaaaccgaaccgaacca 9826845  T
Q  157 atcgaaaccgatctagtttggtt 179  Q
    |   |||||||||||||||||||    
T  9826846 acataaaccgatctagtttggtt 9826868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 23585913 - 23585990
Alignment:
Q  108 gaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttc 185  Q
    |||||| ||||| ||||||||| ||||||||  ||||| | || ||||||   |||||||| ||||||||||||||||    
T  23585913 gaaaaagtatccgaccttgttttgttcggttcaaaaccgaaccaaactaacgtaaaccgatatagtttggtttggttc 23585990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 33729 - 33819
Alignment:
Q  48 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 138  Q
    ||||||| ||||||||||| |||||||||||||||| |||||||||||  |||||||||||||||  ||||  ||||||| ||||| ||||    
T  33729 taggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaattgaaccaaaccgaaaatgtatctgaccttgtctggtttggtt 33819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University