View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2527_high_11 (Length: 250)
Name: NF2527_high_11
Description: NF2527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2527_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 23439670 - 23439433
Alignment:
| Q |
1 |
tcataaaaattaacagtcttgttttattttgtttcctaatgaatttctctagcatagtaaaccaccaacgtagtccctgacttttgcagggcactctcag |
100 |
Q |
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| T |
23439670 |
tcataaaaattaacagtcttgttttattttgtttcctaatgaatttctctagaatagtaaaccaccaacgtagtccctgacttttgcagggcactctcag |
23439571 |
T |
|
| Q |
101 |
ttaggttcctaagcttatgaatctttcaaaaaggtctcagacagactccattaaactgtcaagttaatccttatcttttatcagtcactatcaattaagt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23439570 |
ttaggttcctaagcttatgaatctttcaaagaggtctcagacagactccattaaactgtcaagttaatccttatcttttatcagtcactatcaattaagt |
23439471 |
T |
|
| Q |
201 |
ccctatattttaacaaatcaatgttaatttggccccta |
238 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |
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| T |
23439470 |
ccctatattttaacaaatcaatattaatttggccccta |
23439433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 33159161 - 33159089
Alignment:
| Q |
144 |
gactccattaaactgtcaagttaatccttatcttttatcagtcactatcaattaagtccctatattttaacaa |
216 |
Q |
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| T |
33159161 |
gactccattaaattttcaagttagtccttatatttaaccattaactatcaatcaagtctctatattttaacaa |
33159089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 33168493 - 33168424
Alignment:
| Q |
144 |
gactccattaaactgtcaagttaatccttatcttttatcagtcactatcaattaagtccctatattttaa |
213 |
Q |
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| T |
33168493 |
gactccattaaattttcaagttagtccttatatttaaccattaattatcaatcaagtccctatattttaa |
33168424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 683412 - 683481
Alignment:
| Q |
144 |
gactccattaaactgtcaagttaatccttatcttttatcagtcactatcaattaagtccctatattttaa |
213 |
Q |
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||||| |||||| ||||||||| |||||||| ||| | || | | |||||||||||||| |||||||||| |
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| T |
683412 |
gactctattaaattgtcaagttgatccttatatttaaccacttattatcaattaagtccttatattttaa |
683481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 22994088 - 22994160
Alignment:
| Q |
144 |
gactccattaaactgtcaagttaatccttatcttttatcagtcactatcaattaagtccctatattttaacaa |
216 |
Q |
| |
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||||| |||||||||||||||| |||||||| ||| | | | ||||||||||| || |||||||||| |||| |
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| T |
22994088 |
gactctattaaactgtcaagttgatccttatatttaactatttactatcaattaggtacctatatttttacaa |
22994160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 23794310 - 23794238
Alignment:
| Q |
144 |
gactccattaaactgtcaagttaatccttatcttttatcagtcactatcaattaagtccctatattttaacaa |
216 |
Q |
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||||| |||||||||||||||| |||||||| ||| | | | ||||||||||| || |||||||||| |||| |
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| T |
23794310 |
gactctattaaactgtcaagttgatccttatatttaactatttactatcaattaggtacctatatttttacaa |
23794238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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