View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2527_low_1 (Length: 507)
Name: NF2527_low_1
Description: NF2527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2527_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 10008547 - 10008200
Alignment:
| Q |
14 |
aaaggagcataaacattaactagaataaactcctcgttagttttcacaaagcttccatcaatcaaaagaacatgattgaaagtaaaagacaaccacacct |
113 |
Q |
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| T |
10008547 |
aaaggaacataaacattaactagaataaactcctcattagttttcacaaagcttccattaatcaaaagaacatgattgaaagtaaaggacaaccagacct |
10008448 |
T |
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| Q |
114 |
caacctcaaggcaatcccaaataattaccatacctcctgagcaccaactaaagaacaaaaagaatagacatgaggcaagctgccttaaataggaggacat |
213 |
Q |
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| T |
10008447 |
caacctcaaggcaatcccaaataattatcatacctcctgagcaccaactaaagaataaaaagaatagacatgaggcaagctgccctatataggaggacat |
10008348 |
T |
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| Q |
214 |
aacagatcatcaatataacataacttggtttttcaatttaaaaaatagacgaccacgtatcacccaccaattatcaaacctccaacctcttctcaaaacc |
313 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
10008347 |
aacagatcatcaatataacataacttggattttcaatttagataatagatgaccacgtatcacccaccaaatgtcaaacctccaacctcttctcaaaacc |
10008248 |
T |
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| Q |
314 |
cctca-ccccgtacattctaagaaataatcttcattaaatacatattc |
360 |
Q |
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| T |
10008247 |
cctcacccccgtacattctaagaaataatcttcattaaatacatattc |
10008200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 358 - 491
Target Start/End: Complemental strand, 10007889 - 10007754
Alignment:
| Q |
358 |
ttcttgcaaatatttatttctaatagcacgtcatcgttttttgtcacatgaagc--ctcttttctatccttacacggtaaaccaagcaaccattttcaaa |
455 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
10007889 |
ttcttgcaaatatttatttctaatagcacgtcgtcgtttttcgtcacatgaagcacctcttttccatccttacacggtaaaccgagcaaccattttcaaa |
10007790 |
T |
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| Q |
456 |
ctgtgcacttaatgtctcactaaaccacctactttc |
491 |
Q |
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| T |
10007789 |
ctgtgcacttaatgtctcagtaaaccacctactttc |
10007754 |
T |
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