View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2527_low_2 (Length: 477)
Name: NF2527_low_2
Description: NF2527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2527_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 14 - 458
Target Start/End: Original strand, 410769 - 411205
Alignment:
| Q |
14 |
agaagcacaggttttgtttttctttaatatcctacttccatttgttttagctcacattatttcctgaccaagttgtttttcttaccaattttgactcaat |
113 |
Q |
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| T |
410769 |
agaagcacaggttt-gtttttctttaatatcctacttccatttgttttagctcacattatttccttaccaagttgtttttcttaccaattttgactcaat |
410867 |
T |
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| Q |
114 |
aggagggtgtggctattgaaatagcagaggctgttgttggtgcattgaatggtgaactttcagcaactgctgtcaatgctcctatggttgctcctgaggt |
213 |
Q |
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| T |
410868 |
aggagggtgtggctattgaaatagcagaggctgttgttggtgcattgaatggtgaactttcagcaactgctgtcaatgctcctatggttgctcctgaggt |
410967 |
T |
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| Q |
214 |
aaacaaaacaaccacattgtgacattattatgcttttctcgaataaagaccatagccagcctccacgaaaatcagaattgaattacaagtagtttagaca |
313 |
Q |
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| T |
410968 |
aaacaaaacaacctcattgtgacattattatgcttttctcgaataaagaccatagccagcctccacgaaaatcagaattgaattacaagtagtttagaca |
411067 |
T |
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| Q |
314 |
ttggtcaaatttgtgagttgtgacatctatgattgatgtgcattgttcttctttttcttctattttatttctgtcataactgttggcaatttcatcaggt |
413 |
Q |
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| T |
411068 |
ttggtcaaat-------ttgtgacatctatgattgatgtgcattgttcttctttttcttctattttatttctgtcataactgttggcaatttcatcaggt |
411160 |
T |
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| Q |
414 |
attatcagaactggctccatatgttgtactagctgagaagctagg |
458 |
Q |
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| T |
411161 |
attatcagaactggctccatatgttgtgctagctgagaagctagg |
411205 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 48786060 - 48786108
Alignment:
| Q |
114 |
aggagggtgtggctattgaaatagcagaggctgttgttggtgcattgaa |
162 |
Q |
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| T |
48786060 |
aggaaggtgtggctattgaaatagcagaagctgttgttggggctttgaa |
48786108 |
T |
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