View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2527_low_4 (Length: 449)
Name: NF2527_low_4
Description: NF2527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2527_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 6 - 431
Target Start/End: Original strand, 48985719 - 48986145
Alignment:
| Q |
6 |
agtgagaagaaacaaccatatacctatgtctgatgtgaggtgtctgagctcaagatgtttagtttgtttttcagaaatagtatcnnnnnnngcctgaaaa |
105 |
Q |
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| T |
48985719 |
agtgagaagaaacaaccatatacctatgtctgatgtgaggtgtctgagctcaagatgtttagtttgtttttcagaaatagtatctttttttgcctgaaaa |
48985818 |
T |
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| Q |
106 |
gaaatggaatcatttcctacaattactttatatatgaaaagaaaattcattaagctgcattctgtaattaagtgggtgctttctctttaagattctcaaa |
205 |
Q |
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| T |
48985819 |
gaaatggaatcatttcctacaattactttatatatgaaaagaaaattcattaagctgcattctgtaattaagtggatgctttctctttaagattctcaaa |
48985918 |
T |
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| Q |
206 |
tttgaatttgtttatgctatgtttgaatgagttggaagaagggaaacaaaggctaaaagagatttaggcctcttctttgaagatttttaaagaaagaaat |
305 |
Q |
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| T |
48985919 |
tttgaatttgtttatgctatgtttgaatgagttggaagaagggaaacaaaggctaaaagagatttaggcctcttctttgaagatttttaaagaaagaaat |
48986018 |
T |
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| Q |
306 |
agaaggtaaagtgttccctgtgccttgtcacttgcttaaaacatagttaaggtttgagttatacatg-tttttgtattcaaattctgtttttagtcacca |
404 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
48986019 |
agaaggtaaagtgttccccgagccttgtcacttgcttaaaacatagttaaggtttgagttatacatgttttttgtattcaaattctgtttttagtcacta |
48986118 |
T |
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| Q |
405 |
tcaaattaaatgattatgcgtctggtt |
431 |
Q |
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| T |
48986119 |
tcaaattaaatgattatgcgtctggtt |
48986145 |
T |
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