View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2527_low_5 (Length: 404)
Name: NF2527_low_5
Description: NF2527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2527_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 51 - 390
Target Start/End: Original strand, 42165361 - 42165707
Alignment:
| Q |
51 |
gtttcacaagattttcacatgaggtggcacttattaattggctatttaacatcaatatactttgttttctaccaaggtcaaagggtcaaatggttggtga |
150 |
Q |
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| T |
42165361 |
gtttcacaagattttcacatgaggtggcacttatcaattggctatttaacatcaatatactttgttttc-accaaggtcaaagggtcaaatggttggtga |
42165459 |
T |
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| Q |
151 |
ttaaagcaagcattacacgctcgtgatg------------aaaaaattcgcttcaaatagcggtcatctatttgttttgacgtaaataatatcaacccaa |
238 |
Q |
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| T |
42165460 |
ttaaagca----ttacacgctcgtgatgttttcgggatgaaaaaaattcgcttcaaatagcggtcatctatttgttttgacgtaaataatatcaacccaa |
42165555 |
T |
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| Q |
239 |
aaatttaatgtcataagagcagattattacatggtttttcatttagaaaaaatgaaatttacaaaatcaggtaaatatccacacatttaagtagatattt |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42165556 |
aaatttaatgtcataagagcagattattacatggtttttcatttagaaaaaatgaaatttacaaaatcaggtaaatatccacaaatttaagtagatattt |
42165655 |
T |
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| Q |
339 |
tgaagaaaggtttgtgttattggttaaacacaagtgagagtagatttgttag |
390 |
Q |
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| T |
42165656 |
tgaagaaaggtttgtgttattggttaaaaacaagtgagagtagatttgttag |
42165707 |
T |
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