View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2527_low_6 (Length: 327)
Name: NF2527_low_6
Description: NF2527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2527_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 2628872 - 2628569
Alignment:
| Q |
18 |
tgattagttactattaaagtacttagtactaatcaacgatggatacttcgtaagaataacatgattaacaaaatagagtattgttggatttttcatacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2628872 |
tgattagttactattaaagtacttagtactaaacaacgatggatacttcgtaagaataacatgattaacaaaatagattattgttggatttttcatacaa |
2628773 |
T |
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| Q |
118 |
aaactctagattggattattaaaaagtaatattaaaagatcttataagttgaacgatattaccattattatgtgtgacagtattgtaaaagtcttataaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
2628772 |
aaactctagattggattattaaaaagtaatattaaaagatcttataagttgaacgatattaccattgttaagtgtgacagtattgtaaaagtcttataaa |
2628673 |
T |
|
| Q |
218 |
tacatgaatgtccagaacacaagttcattacctgacaacacttaaaagcaagagctgaatacctatgaaaaattaaattacagaaccaaaatatatacct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628672 |
tacatgaatgtccagaacacaagttcattacctgacaacacttaaaagcaagagctgaatacctatgaaaaattaaattacagaaccaaaatatatacct |
2628573 |
T |
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| Q |
318 |
atgc |
321 |
Q |
| |
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|||| |
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| T |
2628572 |
atgc |
2628569 |
T |
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