View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2527_low_9 (Length: 277)
Name: NF2527_low_9
Description: NF2527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2527_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 114 - 266
Target Start/End: Complemental strand, 37310359 - 37310207
Alignment:
| Q |
114 |
atagaacttgttcaaaactaaaatcaaagtacactctattaaacaaattcatgtagtttcgtacctcgcctctaagttctgcataatagacagctccaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37310359 |
atagaacttgttcaaaactaaaatcaaagtacactctattaaacaaattcatgtagtttcgtacctcgcctctaagttctgcataatagacagctccaaa |
37310260 |
T |
|
| Q |
214 |
tccaccttgaccaattttattatccaagctgaaattatttgtcgcctttgcta |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37310259 |
tccaccttgaccaattttattatccaagctgaaattatttgtcgcctttgcta |
37310207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 114 - 266
Target Start/End: Complemental strand, 37238465 - 37238313
Alignment:
| Q |
114 |
atagaacttgttcaaaactaaaatcaaagtacactctattaaacaaattcatgtagtttcgtacctcgcctctaagttctgcataatagacagctccaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37238465 |
atagaacttgttcaaaactaaaatcaaagtacactctattaaacaaattcatgtagtttcgtacctcgcctctaagttctgcataatagacagctccaaa |
37238366 |
T |
|
| Q |
214 |
tccaccttgaccaattttattatccaagctgaaattatttgtcgcctttgcta |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37238365 |
tccaccttgaccaattttattatccaagctgaaattatttgtcgccttggcta |
37238313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37310475 - 37310429
Alignment:
| Q |
1 |
tgcatacaataagttgcatgagaggaaatcaatgaaaaacgtgaagg |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37310475 |
tgcatacaataagttgcatgagaggaaatcaatgaaaaacgtgaagg |
37310429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37238577 - 37238532
Alignment:
| Q |
1 |
tgcatacaataagttgcatgagaggaaatcaatgaaaaacgtgaagg |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37238577 |
tgcatacaataagttgcatgagaggaaatcaatg-aaaacgtgaagg |
37238532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 37202722 - 37202649
Alignment:
| Q |
182 |
cctctaagttctgcataatagacagctccaaatccaccttgaccaattttattatccaagctgaaattatttgt |
255 |
Q |
| |
|
||||| || |||||||| |||| ||||||| ||||||| ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
37202722 |
cctctcagctctgcatagaagacttctccaaaaccaccttcaccaattttattagccatgctgaaattatttgt |
37202649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University