View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2528_high_1 (Length: 455)
Name: NF2528_high_1
Description: NF2528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2528_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 38 - 436
Target Start/End: Original strand, 30943004 - 30943396
Alignment:
| Q |
38 |
aaaatagatagacaaattacactagagaaacatgcacatcattttggtgtgtgcttttcaaaaaggaaattccaaaattgtctatgagaaatatttagtc |
137 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
30943004 |
aaaattgatagacaaattacactagagaaacatacacatcattttggtgtgtgcttttcaaaaagggaattccaaaattgtctatgagaaatatttggtc |
30943103 |
T |
|
| Q |
138 |
agacctcgccgaacacctttagcaggatctctcctctcaaccacnnnnnnnatcgagaagactcaaaccagagaccttgcttaagaaatccgagttcagt |
237 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30943104 |
agaccttgccgaacacctttagcaggatctctcctct-aaccactttttttatcgagaagactcaaaccagagaccttgcttaagaaatccgagttcagt |
30943202 |
T |
|
| Q |
238 |
tccgctcaaacgtaatgttggttttagacgtgtatagtatagctagtgttcctattattgctcctgggatccaagttccaacctagtatgagagtttaaa |
337 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
30943203 |
tccactcgaacgtaatgttggttttagacgtgtatagg-----tagtgttcctattattgctcctggaatccaagttacaacctagtaagagagtttaaa |
30943297 |
T |
|
| Q |
338 |
ttttacagctaacaaataaacaaagaaataagaatgaaagaaagaatcattttgttgagaacataactcaactcatgaatcaggaactgaactgcttca |
436 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30943298 |
ttttatagctaagaaataaacaaagaaataagaatgaaggagagaatcattttgttgagaacataactcaactcatcaatcaggaactgaactgcttca |
30943396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University