View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2528_high_2 (Length: 328)
Name: NF2528_high_2
Description: NF2528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2528_high_2 |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 22056714 - 22057024
Alignment:
| Q |
1 |
acaatctagaaatatggagtaactttaaagctattatagttttctctaatagacgctgtcatattttaaactagactactttggaaatatgtatcaattt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||| |
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| T |
22056714 |
acaatctagaaatatgaagtaactttaaagctattatagttttctctaatagacactggcatattttaa-ctagattactttggaaatatgtatcaattt |
22056812 |
T |
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| Q |
101 |
caaaacacaactcatgtgattacattcaatagttatagtttctaaaaccattacttgtttcgtctcaaacttgtcgtgcaaatgattaccatacactaat |
200 |
Q |
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| T |
22056813 |
caaaacacaactcatgtgattacattcaatagttatagtttataaaaccattacttgtgtcgtctcaaacttgtcgtgcaaatgattaccatacactaat |
22056912 |
T |
|
| Q |
201 |
gcaatgtgatggaaaacaaagcaaaaatgtgattcatttgtatttattactaattttttaaaactttgctgcaatttgatattgtgctttactacctaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22056913 |
gcaatgtgatggaaaacaaagcaaaaatgtgattcatttgtatttattactaatttttgaaaactttgctgcaatttgatattgtgctttactacctaat |
22057012 |
T |
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| Q |
301 |
ttaggtgaatca |
312 |
Q |
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|||||||||||| |
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| T |
22057013 |
ttaggtgaatca |
22057024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 22055665 - 22055740
Alignment:
| Q |
28 |
aagctattatagttttctctaatagacgctgtcatattttaaactagactactttggaaatatgtatcaatttcaa |
103 |
Q |
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| T |
22055665 |
aagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaa |
22055740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 22064625 - 22064697
Alignment:
| Q |
109 |
aactcatgtgattacattcaatagttatagtttctaaaaccattacttgtttcgtctcaaacttgtcgtgcaa |
181 |
Q |
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| T |
22064625 |
aactcatgtgattacattcaatagttctagtttctaatattattacctatatcgtctcaaacatgccgtgcaa |
22064697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 22076172 - 22076259
Alignment:
| Q |
198 |
aatgcaatgtgatggaaaacaaagcaaaaatgtgattcatttgtatttattactaattt-tttaaaactttgctgcaatttgatattg |
284 |
Q |
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| T |
22076172 |
aatgcaatttcattgaaaacaaagcaaaaatgtgattcatttgcatttatcactattttaatttaaactttgccgcattttaatattg |
22076259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 22064967 - 22065031
Alignment:
| Q |
212 |
gaaaacaaagcaaaaatgtgattcatttgtatttattactaattttttaaaactttgctgcaattt |
277 |
Q |
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| T |
22064967 |
gaaaacaaagcaaaa-tgtgattcatttgcgtttatctctatatttttaaaactttgcggcaattt |
22065031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 22076089 - 22076137
Alignment:
| Q |
108 |
caactcatgtgattacattcaatagttatagtttctaaaaccattactt |
156 |
Q |
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| T |
22076089 |
caactcatgtgattacattcaataagtctagtttctaaaattattactt |
22076137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 6239 - 6186
Alignment:
| Q |
192 |
tacactaatgcaatgtgatggaaaacaaagcaaaaatgtgattcatttgtattt |
245 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||| |||| |
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| T |
6239 |
tacactaatgcaatgtgatggaaagcaaagcaaaaatgtgaatcatttgcattt |
6186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 22622549 - 22622650
Alignment:
| Q |
1 |
acaatctagaaatatggagtaactttaaagctattatagttttctctaatagacgctgtcatattttaaactagactactttggaaatatgtatcaattt |
100 |
Q |
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|||||||||||| ||| | |||||||| |||||||||||||| |||||||||| | |||| ||| ||||||| || | | ||||||||||||||||| |
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| T |
22622549 |
acaatctagaaacatgtggcaactttaa-gctattatagttttttctaatagacattatcattattttaactagaatattctagaaatatgtatcaattt |
22622647 |
T |
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| Q |
101 |
caa |
103 |
Q |
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||| |
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| T |
22622648 |
caa |
22622650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 2932819 - 2932913
Alignment:
| Q |
10 |
aaatatggagtaactttaaagctattatagttttctctaatagacgctgtcatatttta-aactagactactttggaaatatgtatcaatttcaaa |
104 |
Q |
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||||||| || |||||||| |||||| ||||||| |||||||||| |||||| |||| ||||||| || | | ||||||||||||||||||||| |
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| T |
2932819 |
aaatatgtagcaactttaa-gctattctagttttttctaatagacattgtcattttttttaactagaatattctagaaatatgtatcaatttcaaa |
2932913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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