View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2528_low_3 (Length: 282)
Name: NF2528_low_3
Description: NF2528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2528_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 115 - 277
Target Start/End: Original strand, 41308903 - 41309066
Alignment:
| Q |
115 |
tttcttttaattctaaaagtgagattttggataggattaagcatcagatcaagacttttaattttgttatcttctcattcatctcctttctca-nnnnnn |
213 |
Q |
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| T |
41308903 |
tttcttgtaattctaaaagtgagattttggataggattaagcatcagatcaagacttttaattttgttatcttctcattcatcccctttctcattttttt |
41309002 |
T |
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| Q |
214 |
nctccgctgattctccttctgaatttgtttatgtattctttgcttcatcttttcctttgctact |
277 |
Q |
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| T |
41309003 |
tctctgctgattctccttctgaatttgtttatgttttctttgcttcatcttttcctttactact |
41309066 |
T |
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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 41308854 - 41308908
Alignment:
| Q |
19 |
gttaaaaacggtttgaatctttctcctatcttctaattatcaaatattatttctt |
73 |
Q |
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| T |
41308854 |
gttaaaaacggtttgaatctttctcctatcttctaattatcaaatattatttctt |
41308908 |
T |
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