View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2528_low_4 (Length: 253)

Name: NF2528_low_4
Description: NF2528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2528_low_4
NF2528_low_4
[»] chr1 (3 HSPs)
chr1 (9-253)||(22056470-22056714)
chr1 (19-248)||(22055399-22055634)
chr1 (123-209)||(29371871-29371957)
[»] chr4 (6 HSPs)
chr4 (9-237)||(24853286-24853521)
chr4 (9-248)||(51246551-51246797)
chr4 (106-243)||(28787894-28788032)
chr4 (18-253)||(17525421-17525665)
chr4 (9-203)||(24856211-24856412)
chr4 (9-248)||(28786939-28787186)
[»] chr7 (1 HSPs)
chr7 (9-242)||(22622298-22622538)
[»] scaffold0406 (1 HSPs)
scaffold0406 (9-253)||(6204-6455)
[»] chr5 (4 HSPs)
chr5 (106-248)||(5046377-5046520)
chr5 (123-253)||(5663793-5663923)
chr5 (106-253)||(5047143-5047291)
chr5 (106-253)||(5047914-5048062)
[»] chr3 (3 HSPs)
chr3 (106-227)||(12739292-12739414)
chr3 (106-253)||(12738115-12738263)
chr3 (136-220)||(15023016-15023100)
[»] chr8 (1 HSPs)
chr8 (137-237)||(1275259-1275356)
[»] chr2 (2 HSPs)
chr2 (123-227)||(20978885-20978990)
chr2 (18-105)||(20978765-20978851)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 22056470 - 22056714
Alignment:
Q  9 agtagcataggacaagaggacacatattggtaattaactcattgtatgaggaaagaatataatatgatgaagccttcaatagtatctgacattgcatgct 108  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  22056470 agtagcattggacaagaggacacatatttgtaattaactcattgtatgaggagagaatataatatggtgaagccttcaatagtatctgacattgcatgct 22056569  T
Q  109 tgaatgcaattgcaccatttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattagatta 208  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22056570 tgaatgcaattgcaccttttaagtctctttataggtgcttgaagatatttctagaactagaataatctaggcatttgtttgccttttctacattagatta 22056669  T
Q  209 tcatagatgtttctaggctacaaattaatctagacgttaacagaa 253  Q
    |||||||||||| |||||||||||||||||||||| |||||||||    
T  22056670 tcatagatgtttttaggctacaaattaatctagacattaacagaa 22056714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 22055399 - 22055634
Alignment:
Q  19 gacaagaggacacatattggtaattaactcattgtatgaggaaagaatataatatgatgaagccttcaatagtatctgacattgcat-------gcttga 111  Q
    |||||||| ||| | | ||||||||| |||  |||||||||||| ||||||||||| |||||||||||||| |||| ||||||||||       ||||||    
T  22055399 gacaagagaacaaacactggtaattagctccatgtatgaggaaataatataatatggtgaagccttcaatattatc-gacattgcatctgaaaggcttga 22055497  T
Q  112 atgcaattgcaccatttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattagattatca 211  Q
     | |||||||||||||  ||||| |||||| ||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||||| |    
T  22055498 ctacaattgcaccattccagtctatttataagtgcttgaagatgattctagaactaaaataatctaggtctttgtttgccttttatacattagattatta 22055597  T
Q  212 tagatgtttctaggctacaaattaatctagacgttaa 248  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  22055598 tagatgtttctaggctacaatttaatctagacattaa 22055634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 29371957 - 29371871
Alignment:
Q  123 ccatttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattagattat 209  Q
    |||| ||| ||| |||||| |||||||||||||||| ||  ||| ||||||||||| | ||||||||||||||  |||||| |||||    
T  29371957 ccatataaatctatttataagtgcttgaagatgtttataatacttgaataatctagacttttgtttgccttttccacattacattat 29371871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 24853521 - 24853286
Alignment:
Q  9 agtagcataggacaagaggacacatattggtaattaactcattgtatgaggaaagaatataatatgatgaagccttcaatagtatctgacattgcat--- 105  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||       
T  24853521 agtagcattggacaagaggacacatattggtaattagctcattgtaggaggaaagaatatgatatgatgaagccttcaatattat-tgacattgcatctt 24853423  T
Q  106 ----gcttgaatgcaattgca-ccatttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttataca 200  Q
        |||||||| |||||||| |||  ||||||| |||||||||| | |||||||||| ||||||||||||||| ||||| |||||||||||||| ||||    
T  24853422 aaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttttagaactagaataatttaggcctttgtttgccttttctaca 24853323  T
Q  201 ttagattatcatagatgtttctaggctacaaattaat 237  Q
    ||||||||| |||||||||||| ||||| || |||||    
T  24853322 ttagattattatagatgtttcttggctataacttaat 24853286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 51246797 - 51246551
Alignment:
Q  9 agtagcataggacaagaggacacatattggtaattaactcattgtatgaggaaagaatataatatgatgaagccttcaatagtatctgacattgcat--- 105  Q
    ||||| || ||||||||||||||| ||| | ||||| ||||||||| ||||| ||||||| || || |||||||||||||| ||| ||||||| |||       
T  51246797 agtagtatgggacaagaggacacacattaggaattagctcattgtaggaggagagaatatgatttggtgaagccttcaatattat-tgacattacatccc 51246699  T
Q  106 ----gcttgaatgcaattgcacc-atttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttataca 200  Q
        |||||||| |||||||||| || |||||||  ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | ||||    
T  51246698 aaaggcttgaatacaattgcacccatataagtctacttataggtgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctaca 51246599  T
Q  201 ttagattatcatagatgtttctaggctacaaattaatctagacgttaa 248  Q
      ||||||| |||||||||||||||||  || |||| |||||| ||||    
T  51246598 caagattattatagatgtttctaggctttaacttaacctagacattaa 51246551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 28788032 - 28787894
Alignment:
Q  106 gcttgaatgcaattgcacc-atttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattag 204  Q
    |||||||| |||||||||| || || |||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  28788032 gcttgaatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatctaggcctttgttttccttttgtacattag 28787933  T
Q  205 attatcatagatgtttctaggctacaaattaatctagac 243  Q
    || || |||||| |||||||||||||| |||||| ||||    
T  28787932 ataattatagatatttctaggctacaacttaatcgagac 28787894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 17525421 - 17525665
Alignment:
Q  18 ggacaagaggacacatattggtaattaactcattgtatgaggaaagaatataatatgatgaagccttcaatagtatctgaca--ttgcat-------gct 108  Q
    |||||||||||||||| ||   ||||| ||||||||| ||||| ||||||| ||||| |||||||||||||| ||| |||||  ||||||       |||    
T  17525421 ggacaagaggacacatgttatgaattagctcattgtaggaggagagaatatgatatggtgaagccttcaatattat-tgacacattgcatctcaaaggct 17525519  T
Q  109 tgaatgcaattgcac-catttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattagatt 207  Q
    ||||| ||||| ||| ||| ||||||| |||||| | ||||| |||||||||||||||||||||||||||||| |||||||||||| | ||||  |||||    
T  17525520 tgaatacaatttcacacatataagtctatttataagcgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctacacaagatt 17525619  T
Q  208 atcatagatgtttctaggctacaaattaatctagacgttaacagaa 253  Q
    || |||||||||||||||||  || |||| |||||| |||| ||||    
T  17525620 attatagatgtttctaggctttaacttaacctagacattaatagaa 17525665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 24856412 - 24856211
Alignment:
Q  9 agtagcataggacaagaggacacatattggtaattaactcattgtatgaggaaagaatataatatgatgaagccttcaatagtatctgacattgcat--- 105  Q
    |||||||| |||||||| |||||||||||||||||| ||||||||| ||||| ||||||| ||||| |||| | ||||||| ||| |||||||||||       
T  24856412 agtagcattggacaagatgacacatattggtaattagctcattgtaggaggagagaatatgatatggtgaaactttcaatattat-tgacattgcatctt 24856314  T
Q  106 ----gcttgaatgcaattgca-ccatttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttataca 200  Q
        ||| |||| |||||||| ||   ||||||| |||||||||| | ||| |||||||||||||||||||||||||||| |||||||||||||  ||||    
T  24856313 aaaggctggaatacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaactagaataatctaggcctttgtttgcctttcctaca 24856214  T
Q  201 tta 203  Q
    |||    
T  24856213 tta 24856211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 28787186 - 28786939
Alignment:
Q  9 agtagcataggacaagaggacacatattggtaattaactcattgtatgaggaaagaatataatatgatg---aagccttcaatagtatctgacattgcat 105  Q
    |||||||| | ||||||||||||| ||| ||||||| |||||| || ||||| | ||||| ||||| ||   |||||||||||| ||| | |||||||||    
T  28787186 agtagcattgaacaagaggacacacattagtaattacctcattataggaggagataatatgatatggtggtgaagccttcaatattatat-acattgcat 28787088  T
Q  106 -------gcttgaatgcaattgcaccatt-taagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttat 197  Q
           |||||||| ||||||||||| | || |||| ||||||||||||||||||||||||||||||||  ||||| ||||| ||||| | |||||| |    
T  28787087 ctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttctagaacta--ataatttaggcctttgtattccttttct 28786990  T
Q  198 acattagattatcatagatgtttctaggctacaaattaatctagacgttaa 248  Q
    |||| |||| || ||||||||||||||||||||| |||||| |||| ||||    
T  28786989 acataagataattatagatgtttctaggctacaacttaatcgagacattaa 28786939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 22622298 - 22622538
Alignment:
Q  9 agtagcataggacaagaggacacatattggtaattaactcattgtatgaggaaagaatataatatgatgaagccttcaatagtatctgacattgcat--- 105  Q
    |||||||| ||||||||||||||||||||  ||||| |||||| || ||||||||||||| | ||| | | |||| ||||| ||| |||||| ||||       
T  22622298 agtagcattggacaagaggacacatattgtaaattagctcattctaggaggaaagaatatgaaatggtaatgcctacaatattat-tgacatggcatctc 22622396  T
Q  106 ----gcttgaatgcaattgcacc-atttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttataca 200  Q
        |||||||| |||||||||| || |||| || |||||| |||| ||||||||||||||||| ||||||||||||||  |||||||||||||| ||||    
T  22622397 aaaggcttgaatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctaggtctttgtttgccttttctaca 22622496  T
Q  201 ttagattatcatagatgtttctaggctacaaattaatctaga 242  Q
    ||||| |||  ||||||||| |||||||||| ||||||||||    
T  22622497 ttagaatattgtagatgtttttaggctacaatttaatctaga 22622538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 6455 - 6204
Alignment:
Q  9 agtagcataggacaagaggacacatattggtaattaactcattgtatgaggaaagaatataatatgatgaagccttcaatagtatctgacattgcat--- 105  Q
    |||||||| |||||||| |||||| ||| | ||||| |||||| || ||||| | ||||| || |  |||||||||||||| ||| |||||||||||       
T  6455 agtagcattggacaagatgacacacattaggaattagctcattataggaggagataatatgattttgtgaagccttcaatattat-tgacattgcatctc 6357  T
Q  106 ----gcttgaatgcaattgcacc-atttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttataca 200  Q
        |||||||| ||||| |||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | | ||    
T  6356 aaaggcttgaatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctaggcctttgtttgccttatctgca 6257  T
Q  201 ttagattatcatagatgtttctaggctacaaattaatctagacgttaacagaa 253  Q
      ||||||| |||||||||||||||||  || |||| |||||| |||| ||||    
T  6256 caagattattatagatgtttctaggctttaacttaacctagacattaatagaa 6204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 5046520 - 5046377
Alignment:
Q  106 gcttgaatgcaattgcac-catttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattag 204  Q
    |||||||| ||||||||| ||| ||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| | ||||  ||    
T  5046520 gcttgaatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctacacaag 5046421  T
Q  205 attatcatagatgtttctaggctacaaattaatctagacgttaa 248  Q
    ||||| |||||||||||||||||  || |||| |||||| ||||    
T  5046420 attattatagatgtttctaggctttaacttaacctagacattaa 5046377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 5663793 - 5663923
Alignment:
Q  123 ccatttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattagattatcatagatgtttct 222  Q
    |||| ||| ||| |||||| ||| ||||||||||||||| |||||||| | ||||||| ||||||| || ||| ||||||||||||| ||||||||||||    
T  5663793 ccatataattctatttataagtgattgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttct 5663892  T
Q  223 aggctacaaattaatctagacgttaacagaa 253  Q
    ||||||||| ||||| ||||| |||| ||||    
T  5663893 aggctacaatttaatttagacattaatagaa 5663923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 106 - 253
Target Start/End: Complemental strand, 5047291 - 5047143
Alignment:
Q  106 gcttgaatgcaattgcac-catttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattag 204  Q
    |||||||| ||||||||| ||| ||||| | |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| | || |  ||    
T  5047291 gcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctagacaag 5047192  T
Q  205 attatcatagatgtttctaggctacaaattaatctagacgttaacagaa 253  Q
    ||||| ||||||| ||| |||||  || |||| |||||| |||| ||||    
T  5047191 attattatagatggttcaaggctttaacttaacctagacattaatagaa 5047143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 106 - 253
Target Start/End: Complemental strand, 5048062 - 5047914
Alignment:
Q  106 gcttgaatgcaattgcac-catttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattag 204  Q
    |||||||| ||||||||| ||| ||||| | |||||||||||||| |||||||| || |||||||||||||||||| |||||||||||| | ||||  ||    
T  5048062 gcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatctaggcctttgtttgccttatctacacaag 5047963  T
Q  205 attatcatagatgtttctaggctacaaattaatctagacgttaacagaa 253  Q
    ||||| ||||||| ||| |||||  || |||| |||||| |||| ||||    
T  5047962 attattatagatggttcaaggctttaacttaacctagacattaatagaa 5047914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 12739414 - 12739292
Alignment:
Q  106 gcttgaatgcaattgca-ccatttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattag 204  Q
    |||||||| |||||||| |||  ||| ||| ||||||| |||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||||  ||    
T  12739414 gcttgaatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatctaggcttttgtttgccttttctacacaag 12739315  T
Q  205 attatcatagatgtttctaggct 227  Q
    ||||| |||||||||||||||||    
T  12739314 attattatagatgtttctaggct 12739292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 106 - 253
Target Start/End: Complemental strand, 12738263 - 12738115
Alignment:
Q  106 gcttgaatgcaattgcacc-atttaagtctctttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattag 204  Q
    |||||||| |||||||||| |  ||||| | |||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||| ||||  ||    
T  12738263 gcttgaatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaactaaaattatctaggcttttgtttgccttttctacacaag 12738164  T
Q  205 attatcatagatgtttctaggctacaaattaatctagacgttaacagaa 253  Q
    || || || ||||||||||||||  |  ||||||||||| |||| ||||    
T  12738163 ataattattgatgtttctaggctttaccttaatctagacattaatagaa 12738115  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 15023100 - 15023016
Alignment:
Q  136 tttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattagattatcatagatgttt 220  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||  ||||||| ||||||||||    
T  15023100 tttataggtgcttgtagatgtttctagaactaaaataatctaggcatttgtttgccttatctacacaagattattatagatgttt 15023016  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 1275259 - 1275356
Alignment:
Q  137 ttataggtgcttgaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattagattatcatagatgtttctaggctacaaattaa 236  Q
    |||||||||||||||| |||||||||||||||| |   |||||| |||||||||| ||| ||||||||||||| ||||||||||||| |||| || ||||    
T  1275259 ttataggtgcttgaaggtgtttctagaactagatt---ctaggcctttgtttgccatttctacattagattattatagatgtttctaagctataacttaa 1275355  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 20978885 - 20978990
Alignment:
Q  123 ccatttaagtctctttataggtgctt-gaagatgtttctagaactagaataatctaggcatttgtttgccttttatacattagattatcatagatgtttc 221  Q
    |||| ||||| | ||||||||| ||| | |||||||||||||||||||||||||||  | |||||||||||| | ||||  | ||||| |||||||||||    
T  20978885 ccatataagtttatttataggtactttgtagatgtttctagaactagaataatctatacctttgtttgccttatctacacaatattattatagatgtttc 20978984  T
Q  222 taggct 227  Q
    ||||||    
T  20978985 taggct 20978990  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 20978765 - 20978851
Alignment:
Q  18 ggacaagaggacacatattggtaattaactcattgtatgaggaaagaatataatatgatgaagccttcaatagtatctgacattgcat 105  Q
    ||||||||||||||| ||| || || | |  |||||| ||||| ||||||| ||||| |||||||||||||| ||| |||||||||||    
T  20978765 ggacaagaggacacacattagtgataagcatattgtaggaggagagaatatgatatggtgaagccttcaatattat-tgacattgcat 20978851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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